Variant report

Variant	rs201851004
Chromosome Location	chr6:167459692-167459693
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:167459004..167459905-chr6:167555024..167555917,3	MCF-7	breast:
2	chr6:167453011..167457183-chr6:167458189..167461851,4	K562	blood:
3	chr6:167200327..167200836-chr6:167459295..167459843,2	K562	blood:
4	chr6:167188018..167188945-chr6:167458801..167459761,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
7	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
9	nsv464140	chr6:167426681-167492552	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv886943	chr6:167440244-167502638	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv2752099	chr6:167448181-167579102	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv519550	chr6:167450609-167473685	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv1841903	chr6:167459596-167489090	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv1408608	chr6:167459693-167459694	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167441000-167461800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:167441400-167473400	Weak transcription	Psoas Muscle	Psoas
3	chr6:167445600-167460200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:167448200-167459800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:167448200-167467200	Weak transcription	HMEC	breast
6	chr6:167448400-167467200	Weak transcription	NHEK	skin
7	chr6:167448800-167460000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:167449000-167467800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:167449000-167470400	Weak transcription	Brain Anterior Caudate	brain
10	chr6:167449800-167462800	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:167450000-167460800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:167450000-167467400	Weak transcription	Ovary	ovary
13	chr6:167450200-167463000	Weak transcription	Brain Germinal Matrix	brain
14	chr6:167450600-167460600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:167450600-167463000	Weak transcription	Fetal Brain Female	brain
16	chr6:167451200-167460200	Weak transcription	Placenta	Placenta
17	chr6:167451600-167461600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:167451600-167462000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:167451600-167463600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:167451600-167467000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:167451600-167467400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:167451600-167468400	Weak transcription	Esophagus	oesophagus
23	chr6:167452000-167460000	Weak transcription	Stomach Mucosa	stomach
24	chr6:167453800-167460200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:167454000-167460200	Weak transcription	Fetal Thymus	thymus
26	chr6:167454000-167460200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:167454000-167463400	Weak transcription	Aorta	Aorta
28	chr6:167454000-167464600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:167454200-167459800	Weak transcription	Fetal Lung	lung
30	chr6:167454200-167462600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:167454400-167461600	Weak transcription	A549	lung
32	chr6:167454400-167463200	Weak transcription	Brain Substantia Nigra	brain
33	chr6:167454600-167464400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:167454800-167459800	Strong transcription	Fetal Intestine Small	intestine
35	chr6:167455000-167459800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:167455000-167462600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:167455000-167462800	Weak transcription	HSMM	muscle
38	chr6:167455000-167470600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:167455200-167467600	Weak transcription	Liver	Liver
40	chr6:167455400-167459800	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr6:167456000-167460400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:167456200-167460600	Weak transcription	Adipose Nuclei	Adipose
43	chr6:167456200-167467000	Weak transcription	Left Ventricle	heart
44	chr6:167456200-167467400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:167456200-167468400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr6:167456200-167470800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:167456400-167460000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:167456400-167461000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:167456600-167460000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr6:167456600-167460000	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links