Variant report

Variant	rs2018722
Chromosome Location	chr1:212339569-212339570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr1:212339564-212341003	HUVEC	blood vessel:	n/a	chr1:212340852-212340862 chr1:212340270-212340278

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212338901..212340662-chr1:212347874..212350211,2	K562	blood:
2	chr1:212335142..212337440-chr1:212338165..212340749,2	K562	blood:

Variant related genes	Relation type
ENSG00000229983	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11119856	0.89[YRI][hapmap]
rs11802742	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17018586	0.87[AMR][1000 genomes]
rs17018589	0.87[AMR][1000 genomes]
rs58525076	0.87[AMR][1000 genomes]
rs73078457	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7528369	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999738	chr1:212218618-212513690	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212309000-212347200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:212324600-212340400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:212333000-212342000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:212335800-212340400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:212336000-212339600	Weak transcription	Adipose Nuclei	Adipose
6	chr1:212336000-212339600	Weak transcription	Right Ventricle	heart
7	chr1:212336200-212340000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:212336200-212340000	Weak transcription	Osteobl	bone
9	chr1:212336200-212340400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:212336400-212339800	Weak transcription	Aorta	Aorta
11	chr1:212336400-212339800	Weak transcription	Stomach Mucosa	stomach
12	chr1:212336400-212339800	Weak transcription	NHDF-Ad	bronchial
13	chr1:212336400-212340200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:212336400-212340200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr1:212336400-212340200	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:212336400-212340200	Weak transcription	Fetal Stomach	stomach
17	chr1:212336400-212340200	Weak transcription	HSMM	muscle
18	chr1:212336400-212340400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:212336400-212340400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:212336400-212340400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr1:212336600-212339600	Weak transcription	Spleen	Spleen
22	chr1:212336600-212339800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:212336600-212339800	Weak transcription	NHLF	lung
24	chr1:212336600-212340200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:212336600-212340200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr1:212336600-212340200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr1:212336600-212340200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:212336600-212340400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr1:212336600-212340400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr1:212336800-212339600	Weak transcription	Fetal Thymus	thymus
31	chr1:212336800-212339600	Weak transcription	Left Ventricle	heart
32	chr1:212336800-212339600	Weak transcription	Lung	lung
33	chr1:212336800-212339600	Weak transcription	Psoas Muscle	Psoas
34	chr1:212336800-212339600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr1:212336800-212340000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr1:212336800-212340400	Weak transcription	Right Atrium	heart
37	chr1:212336800-212359600	Weak transcription	Dnd41	blood
38	chr1:212337200-212340200	Weak transcription	Primary T cells from cord blood	blood
39	chr1:212337600-212339600	Weak transcription	Thymus	Thymus
40	chr1:212338800-212339600	Weak transcription	GM12878-XiMat	blood
41	chr1:212339000-212339600	Enhancers	HUVEC	blood vessel
42	chr1:212339000-212340000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr1:212339000-212340800	Enhancers	Primary hematopoietic stem cells	blood
44	chr1:212339200-212340200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:212339200-212340800	Enhancers	K562	blood
46	chr1:212339200-212341200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr1:212339400-212340800	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links