Variant report

Variant	rs58525076
Chromosome Location	chr1:212319576-212319577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11802189	0.84[AFR][1000 genomes]
rs11802742	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11809441	0.97[AFR][1000 genomes]
rs17018586	1.00[AMR][1000 genomes]
rs17018589	1.00[AMR][1000 genomes]
rs2018722	0.87[AMR][1000 genomes]
rs57901353	0.90[AFR][1000 genomes]
rs73078457	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091249	0.97[AFR][1000 genomes]
rs73091264	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999738	chr1:212218618-212513690	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212287400-212320600	Weak transcription	A549	lung
2	chr1:212300000-212320800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:212301000-212321000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:212309000-212320800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:212309000-212320800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:212309000-212321000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:212309000-212347200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:212313400-212320600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:212313400-212325800	Weak transcription	Right Atrium	heart
10	chr1:212313400-212326200	Weak transcription	Colonic Mucosa	Colon
11	chr1:212313600-212324400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr1:212314400-212332200	Weak transcription	Dnd41	blood
13	chr1:212315000-212320400	Weak transcription	Thymus	Thymus
14	chr1:212315200-212320600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:212315800-212320400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:212316600-212320400	Weak transcription	K562	blood
17	chr1:212319200-212319600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:212319400-212320600	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links