Variant report

Variant	rs201927435
Chromosome Location	chr10:91404388-91404389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:285)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:285 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:91404334-91405088	HUVEC	blood vessel:	n/a	n/a
2	BHLHE40	chr10:91403636-91404650	K562	blood:	n/a	n/a
3	POLR2A	chr10:91403700-91405389	A549	lung:	n/a	n/a
4	POLR2A	chr10:91403400-91405426	ECC-1	luminal epithelium:	n/a	n/a
5	MXI1	chr10:91403283-91406204	HepG2	liver:	n/a	n/a
6	POLR2A	chr10:91403586-91405802	K562	blood:	n/a	n/a
7	CTCF	chr10:91404300-91404450	RPTEC	kidney:	n/a	n/a
8	POLR2A	chr10:91403437-91405448	K562	blood:	n/a	n/a
9	POLR2A	chr10:91403723-91404648	HepG2	liver:	n/a	n/a
10	POLR2A	chr10:91403641-91405454	A549	lung:	n/a	n/a
11	YY1	chr10:91403742-91405560	HepG2	liver:	n/a	chr10:91404302-91404316
12	UBTF	chr10:91403448-91405324	K562	blood:	n/a	n/a
13	POLR2A	chr10:91403597-91405490	GM18951	blood:	n/a	n/a
14	TAF1	chr10:91403545-91404483	MCF-7	breast:	n/a	n/a
15	CREB1	chr10:91403583-91405549	GM12878	blood:	n/a	n/a
16	MXI1	chr10:91404240-91404416	K562	blood:	n/a	n/a
17	MAX	chr10:91403457-91405754	A549	lung:	n/a	chr10:91405450-91405460
18	POLR2A	chr10:91403303-91404544	HepG2	liver:	n/a	n/a
19	POLR2A	chr10:91403689-91405445	GM18526	blood:	n/a	n/a
20	SMARCB1	chr10:91403699-91405465	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr10:91403587-91405376	HUVEC	blood vessel:	n/a	n/a
22	CHD1	chr10:91403595-91405162	GM12878	blood:	n/a	n/a
23	YY1	chr10:91404266-91405176	GM12891	blood:	n/a	chr10:91404302-91404316
24	SP1	chr10:91403414-91404426	HCT-116	colon:	n/a	chr10:91403781-91403802 chr10:91403717-91403738
25	CEBPD	chr10:91403516-91405139	HepG2	liver:	n/a	chr10:91403624-91403635
26	BHLHE40	chr10:91403644-91406106	HepG2	liver:	n/a	n/a
27	POLR2A	chr10:91403417-91404803	HepG2	liver:	n/a	n/a
28	MAX	chr10:91403560-91405896	K562	blood:	n/a	chr10:91405450-91405460
29	POLR2A	chr10:91403380-91405480	MCF10A-Er-Src	breast:	n/a	n/a
30	POLR2A	chr10:91403404-91405296	MCF10A-Er-Src	breast:	n/a	n/a
31	TAF1	chr10:91403640-91405360	HepG2	liver:	n/a	n/a
32	RELA	chr10:91403372-91405612	GM15510	blood:	n/a	n/a
33	MAZ	chr10:91403545-91404483	HepG2	liver:	n/a	n/a
34	TBP	chr10:91403154-91404491	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr10:91403300-91406084	HepG2	liver:	n/a	n/a
36	MAX	chr10:91403554-91405711	GM12878	blood:	n/a	chr10:91405450-91405460
37	MYC	chr10:91404223-91404596	MCF-7	breast:	n/a	n/a
38	CHD2	chr10:91403539-91404492	HepG2	liver:	n/a	n/a
39	POLR2A	chr10:91403289-91406020	HepG2	liver:	n/a	n/a
40	NFIC	chr10:91403678-91405640	ECC-1	luminal epithelium:	n/a	n/a
41	POLR2A	chr10:91404102-91404697	A549	lung:	n/a	n/a
42	SIN3A	chr10:91403486-91405487	GM12878	blood:	n/a	n/a
43	TAF1	chr10:91403389-91405552	H1-hESC	embryonic stem cell:	n/a	n/a
44	SIN3AK20	chr10:91403601-91405160	PANC-1	pancreas:	n/a	n/a
45	RUNX3	chr10:91403375-91405582	GM12878	blood:	n/a	n/a
46	POLR2A	chr10:91403202-91406021	GM12891	blood:	n/a	n/a
47	MXI1	chr10:91402981-91406341	SK-N-SH	brain:	n/a	n/a
48	HNF4A	chr10:91403428-91404389	HepG2	liver:	n/a	chr10:91404092-91404107 chr10:91404146-91404160 chr10:91404142-91404164
49	POLR2A	chr10:91403704-91405410	GM12878	blood:	n/a	n/a
50	POLR2A	chr10:91403462-91405337	PANC-1	pancreas:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:91403635..91406711-chr10:91457604..91462894,9	MCF-7	breast:
2	chr10:91402369..91405488-chr10:91459565..91463449,8	K562	blood:
3	chr10:91371070..91374344-chr10:91402272..91406788,6	MCF-7	breast:
4	chr10:91401983..91406312-chr10:91459063..91463449,10	K562	blood:
5	chr10:91402267..91405688-chr10:91407429..91411344,10	K562	blood:
6	chr10:70480750..70481482-chr10:91403808..91404438,2	Hela-S3	cervix:
7	chr10:91403809..91404792-chr4:73935189..73935933,2	NB4	blood:
8	chr10:91403860..91404543-chr17:54991495..54992488,2	Hela-S3	cervix:
9	chr10:91403856..91404455-chr19:13263583..13264426,2	Hela-S3	cervix:
10	chr10:91402715..91410625-chr10:91458897..91464646,18	MCF-7	breast:
11	chr10:91403863..91404498-chr10:124913819..124914546,2	Hela-S3	cervix:
12	chr10:91403856..91404431-chr16:89988692..89989667,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
PANK1	TF binding region
ENSG00000232936	TF binding region
ENSG00000259006	Chromatin interaction
ENSG00000138182	Chromatin interaction
ENSG00000240996	Chromatin interaction
ENSG00000154473	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000225836	Chromatin interaction
ENSG00000235100	Chromatin interaction
ENSG00000060339	Chromatin interaction
ENSG00000163626	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419628	chr10:91403597-91406145	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91401000-91405200	Active TSS	GM12878-XiMat	blood
2	chr10:91401600-91405200	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr10:91401600-91405400	Active TSS	Fetal Kidney	kidney
4	chr10:91402000-91405200	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr10:91402000-91405200	Active TSS	Liver	Liver
6	chr10:91402000-91405400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:91402000-91405400	Active TSS	H1 Cell Line	embryonic stem cell
8	chr10:91402000-91405800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:91402200-91405200	Active TSS	Fetal Intestine Small	intestine
10	chr10:91402200-91405400	Active TSS	K562	blood
11	chr10:91402400-91405200	Active TSS	HepG2	liver
12	chr10:91402400-91405400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:91402600-91405200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:91402600-91405200	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr10:91402600-91405400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:91402600-91405400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:91402800-91405200	Active TSS	HMEC	breast
18	chr10:91402800-91405200	Active TSS	NHLF	lung
19	chr10:91402800-91405400	Active TSS	Fetal Muscle Leg	muscle
20	chr10:91403000-91404400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:91403000-91404800	Active TSS	Right Atrium	heart
22	chr10:91403000-91405200	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr10:91403000-91405200	Active TSS	Fetal Intestine Large	intestine
24	chr10:91403000-91405200	Active TSS	Hela-S3	cervix
25	chr10:91403000-91405200	Active TSS	NHDF-Ad	bronchial
26	chr10:91403000-91405400	Active TSS	H9 Cell Line	embryonic stem cell
27	chr10:91403000-91405400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:91403000-91405400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:91403000-91405400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:91403000-91405400	Active TSS	Brain Germinal Matrix	brain
31	chr10:91403000-91405400	Active TSS	Psoas Muscle	Psoas
32	chr10:91403000-91405400	Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr10:91403000-91405600	Active TSS	Fetal Muscle Trunk	muscle
34	chr10:91403000-91405800	Flanking Active TSS	Primary hematopoietic stem cells	blood
35	chr10:91403200-91404600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:91403200-91405200	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr10:91403200-91405200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:91403200-91405200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:91403200-91405200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:91403200-91405200	Active TSS	Brain Substantia Nigra	brain
41	chr10:91403200-91405200	Active TSS	Colonic Mucosa	Colon
42	chr10:91403200-91405200	Active TSS	Placenta	Placenta
43	chr10:91403200-91405200	Active TSS	Osteobl	bone
44	chr10:91403200-91405400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:91403200-91405400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:91403200-91405400	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr10:91403200-91405400	Active TSS	Brain Cingulate Gyrus	brain
48	chr10:91403200-91405400	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr10:91403200-91405400	Active TSS	Rectal Smooth Muscle	rectum
50	chr10:91403200-91405400	Active TSS	Sigmoid Colon	Sigmoid Colon

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