Variant report

Variant	esv3419628
Chromosome Location	chr10:91403597-91406145
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:838)
CpG islands
(count:917)
Chromatin interactive
region (count:28)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:838 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:91403423-91404271	HepG2	liver:	n/a	n/a
2	ARID3A	chr10:91404925-91406323	HepG2	liver:	n/a	n/a
3	ARID3A	chr10:91403374-91404081	K562	blood:	n/a	n/a
4	ATF1	chr10:91403582-91404007	K562	blood:	n/a	n/a
5	ATF2	chr10:91403740-91404127	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr10:91403543-91404182	GM12878	blood:	n/a	n/a
7	ATF3	chr10:91403684-91404223	A549	lung:	n/a	n/a
8	BACH1	chr10:91404801-91405399	H1-hESC	embryonic stem cell:	n/a	n/a
9	BCL3	chr10:91404881-91405588	A549	lung:	n/a	n/a
10	BCL3	chr10:91403625-91404226	A549	lung:	n/a	n/a
11	BCL3	chr10:91404555-91405199	GM12878	blood:	n/a	n/a
12	BCL3	chr10:91403672-91404350	A549	lung:	n/a	chr10:91404263-91404276 chr10:91404269-91404282
13	BCLAF1	chr10:91403303-91404141	GM12878	blood:	n/a	n/a
14	BCLAF1	chr10:91404547-91405484	GM12878	blood:	n/a	n/a
15	BHLHE40	chr10:91403492-91405465	GM12878	blood:	n/a	n/a
16	BHLHE40	chr10:91403644-91406106	HepG2	liver:	n/a	n/a
17	BHLHE40	chr10:91403636-91404650	K562	blood:	n/a	n/a
18	BRCA1	chr10:91404095-91404100	GM12878	blood:	n/a	n/a
19	BRCA1	chr10:91403401-91404200	Hela-S3	cervix:	n/a	n/a
20	BRCA1	chr10:91404662-91405627	Hela-S3	cervix:	n/a	n/a
21	BRCA1	chr10:91405258-91405538	H1-hESC	embryonic stem cell:	n/a	n/a
22	CBX3	chr10:91403557-91404027	K562	blood:	n/a	n/a
23	CCNT2	chr10:91404133-91405094	K562	blood:	n/a	n/a
24	CEBPB	chr10:91405679-91406024	IMR90	lung:	n/a	chr10:91405856-91405867
25	CEBPB	chr10:91403438-91403843	K562	blood:	n/a	chr10:91403625-91403636
26	CEBPB	chr10:91405674-91406011	A549	lung:	n/a	chr10:91405856-91405867
27	CEBPB	chr10:91404924-91406046	HepG2	liver:	n/a	chr10:91405856-91405867
28	CEBPB	chr10:91403471-91403830	A549	lung:	n/a	chr10:91403625-91403636
29	CEBPB	chr10:91403312-91404408	ECC-1	luminal epithelium:	n/a	chr10:91403625-91403636 chr10:91403340-91403351
30	CEBPB	chr10:91403343-91403975	MCF-7	breast:	n/a	chr10:91403625-91403636
31	CEBPB	chr10:91404690-91406037	Hela-S3	cervix:	n/a	chr10:91405856-91405867
32	CEBPB	chr10:91403430-91404216	Hela-S3	cervix:	n/a	chr10:91403625-91403636
33	CEBPB	chr10:91403450-91403715	K562	blood:	n/a	chr10:91403625-91403636
34	CEBPB	chr10:91405047-91405289	H1-hESC	embryonic stem cell:	n/a	n/a
35	CEBPB	chr10:91404872-91405479	IMR90	lung:	n/a	n/a
36	CEBPB	chr10:91403434-91404432	HepG2	liver:	n/a	chr10:91403625-91403636
37	CEBPB	chr10:91405670-91406054	K562	blood:	n/a	chr10:91405856-91405867
38	CEBPB	chr10:91404977-91405353	A549	lung:	n/a	n/a
39	CEBPB	chr10:91403432-91404011	HepG2	liver:	n/a	chr10:91403625-91403636
40	CEBPB	chr10:91405639-91406099	HepG2	liver:	n/a	chr10:91405856-91405867
41	CEBPB	chr10:91404761-91406138	A549	lung:	n/a	chr10:91405856-91405867
42	CEBPB	chr10:91403419-91404205	K562	blood:	n/a	chr10:91403625-91403636
43	CEBPB	chr10:91403326-91403886	ECC-1	luminal epithelium:	n/a	chr10:91403625-91403636 chr10:91403340-91403351
44	CEBPB	chr10:91403380-91403838	HepG2	liver:	n/a	chr10:91403625-91403636
45	CEBPB	chr10:91404896-91405332	HepG2	liver:	n/a	n/a
46	CEBPB	chr10:91403354-91404004	A549	lung:	n/a	chr10:91403625-91403636
47	CEBPB	chr10:91405673-91405995	H1-hESC	embryonic stem cell:	n/a	chr10:91405856-91405867
48	CEBPB	chr10:91405683-91406011	K562	blood:	n/a	chr10:91405856-91405867
49	CEBPB	chr10:91403480-91403822	HepG2	liver:	n/a	chr10:91403625-91403636
50	CEBPB	chr10:91405729-91405950	HepG2	liver:	n/a	chr10:91405856-91405867

(count:917 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:91404463-91404513	SK-N-SH	brain:	n/a
2	chr10:91405677-91405727	HAEpiC	amniotic membrane:	n/a
3	chr10:91404463-91404513	SK-N-SH	brain:	n/a
4	chr10:91405677-91405727	HAEpiC	amniotic membrane:	n/a
5	chr10:91405277-91405327	IMR90	lung:	fetal
6	chr10:91405982-91406032	HNPCEpiC	eye:	n/a
7	chr10:91405300-91405350	Caco-2	colon:	n/a
8	chr10:91404454-91404504	NT2-D1	testis:	n/a
9	chr10:91404689-91404739	NT2-D1	testis:	n/a
10	chr10:91405298-91405348	U87	brain:	n/a
11	chr10:91404063-91404113	GM12892	blood:	n/a
12	chr10:91404463-91404513	HAEpiC	amniotic membrane:	n/a
13	chr10:91405006-91405056	AG04450	lung:	fetal
14	chr10:91403645-91403695	SK-N-MC	brain:	n/a
15	chr10:91404454-91404504	PFSK-1	brain:	n/a
16	chr10:91404689-91404739	HAEpiC	amniotic membrane:	n/a
17	chr10:91405685-91405735	CMK	blood:	n/a
18	chr10:91405298-91405348	NHBE	bronchial:	n/a
19	chr10:91405277-91405327	GM12892	blood:	n/a
20	chr10:91405298-91405348	GM12892	blood:	n/a
21	chr10:91404454-91404504	GM12878	blood:	n/a
22	chr10:91405265-91405315	NB4	blood:	n/a
23	chr10:91405685-91405735	HAEpiC	amniotic membrane:	n/a
24	chr10:91404454-91404504	HRPEpiC	eye:	n/a
25	chr10:91404063-91404113	SK-N-MC	brain:	n/a
26	chr10:91403800-91403850	HMEC	breast:	n/a
27	chr10:91405277-91405327	HPAEpiC	pulmonary alveolar:	n/a
28	chr10:91405685-91405735	HRCEpiC	kidney:	n/a
29	chr10:91405982-91406032	SKMC	muscle:	n/a
30	chr10:91404689-91404739	SKMC	muscle:	n/a
31	chr10:91405006-91405056	CMK	blood:	n/a
32	chr10:91405298-91405348	AG09309	skin:	n/a
33	chr10:91404463-91404513	NH-A	brain:	n/a
34	chr10:91404454-91404504	ovcar-3	ovarian:	n/a
35	chr10:91403800-91403850	AG04449	skin:	fetal
36	chr10:91404689-91404739	NHDF-neo	bronchial:	n/a
37	chr10:91405300-91405350	MCF10A-Er-Src	breast:	n/a
38	chr10:91405277-91405327	HCM	heart:	n/a
39	chr10:91405685-91405735	HepG2	liver:	n/a
40	chr10:91405265-91405315	NT2-D1	testis:	n/a
41	chr10:91403655-91403705	AoSMC	blood vessel:	n/a
42	chr10:91404063-91404113	SK-N-SH_RA	brain:	n/a
43	chr10:91404454-91404504	HIPEpiC	eye:	n/a
44	chr10:91404454-91404504	U87	brain:	n/a
45	chr10:91403645-91403695	Hepatocyte	liver:	n/a
46	chr10:91403655-91403705	IMR90	lung:	fetal
47	chr10:91405265-91405315	ovcar-3	ovarian:	n/a
48	chr10:91403645-91403695	HEK293	kidney:	embryo
49	chr10:91403800-91403850	GM12878	blood:	n/a
50	chr10:91403800-91403850	HL-60	blood:	n/a

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:91395971..91398533-chr10:91405647..91407667,2	K562	blood:
2	chr10:91403809..91404792-chr4:73935189..73935933,2	NB4	blood:
3	chr10:91403856..91404455-chr19:13263583..13264426,2	Hela-S3	cervix:
4	chr10:91403572..91404172-chr19:49588652..49589213,2	Hela-S3	cervix:
5	chr10:91405159..91405953-chr11:62608642..62609620,2	NB4	blood:
6	chr10:91402715..91410625-chr10:91458897..91464646,18	MCF-7	breast:
7	chr10:70480750..70481482-chr10:91403808..91404438,2	Hela-S3	cervix:
8	chr10:91406096..91408385-chr10:91460120..91462527,2	K562	blood:
9	chr10:91403504..91404306-chr7:91874779..91875485,2	NB4	blood:
10	chr10:91401983..91406312-chr10:91459063..91463449,10	K562	blood:
11	chr10:91402561..91404356-chr12:56108835..56111046,2	MCF-7	breast:
12	chr10:91371070..91374344-chr10:91402272..91406788,6	MCF-7	breast:
13	chr10:91369955..91372663-chr10:91402410..91404170,2	K562	blood:
14	chr10:91406004..91407517-chr10:91408220..91410152,2	K562	blood:
15	chr10:91404448..91405311-chr17:7387596..7388124,2	Hela-S3	cervix:
16	chr10:91404659..91405372-chr5:72251877..72252838,2	Hela-S3	cervix:
17	chr10:91402369..91405488-chr10:91459565..91463449,8	K562	blood:
18	chr10:91403668..91404273-chr3:186500942..186501784,2	Hela-S3	cervix:
19	chr10:91403635..91406711-chr10:91457604..91462894,9	MCF-7	breast:
20	chr10:91402267..91405688-chr10:91407429..91411344,10	K562	blood:
21	chr10:91404490..91405092-chr19:47291368..47292003,2	NB4	blood:
22	chr10:91404532..91405251-chr7:112090121..112090948,2	NB4	blood:
23	chr10:91403333..91404068-chr15:65588290..65588813,2	Hela-S3	cervix:
24	chr10:91403860..91404543-chr17:54991495..54992488,2	Hela-S3	cervix:
25	chr10:91403856..91404431-chr16:89988692..89989667,2	Hela-S3	cervix:
26	chr10:91403863..91404498-chr10:124913819..124914546,2	Hela-S3	cervix:
27	chr10:91403655..91404330-chr9:130213244..130214014,2	NB4	blood:
28	chr1:59249568..59250095-chr10:91404878..91405691,2	Hela-S3	cervix:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIF20B-1	chr10:91405199-91405256	ENSG00000232936.1
2	lnc-SLC16A12-1	chr10:91403454-91403713	NONHSAT015519
3	lnc-PANK1-1	chr10:91406046-91406303	XLOC_008896
4	lnc-KIF20B-1	chr10:91405039-91405214	ENSG00000232936.1

No data

Variant related genes	Relation type
ENSG00000249962	TF binding region
ENSG00000232936	TF binding region
PANK1	TF binding region
ENSG00000249962	CpG island
ENSG00000232936	CpG island
PANK1	CpG island
ENSG00000259006	chromatin interactions
ENSG00000156976	chromatin interactions
ENSG00000240996	chromatin interactions
ENSG00000001631	chromatin interactions
ENSG00000181222	chromatin interactions
ENSG00000135441	chromatin interactions
ENSG00000199568	chromatin interactions
ENSG00000225836	chromatin interactions
ENSG00000197958	chromatin interactions
ENSG00000105281	chromatin interactions
ENSG00000163626	chromatin interactions
ENSG00000235100	chromatin interactions
ENSG00000006652	chromatin interactions
ENSG00000135424	chromatin interactions
ENSG00000148356	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000104852	chromatin interactions
ENSG00000177606	chromatin interactions
ENSG00000152782	chromatin interactions
ENSG00000157107	chromatin interactions
ENSG00000060339	chromatin interactions
ENSG00000138182	chromatin interactions
ENSG00000154473	chromatin interactions
ENSG00000258311	chromatin interactions

Extended variants
information (count: 109 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:109 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115667971	chr10:91403597-91403598	Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
2	rs565375198	chr10:91403607-91403608	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
3	rs546501995	chr10:91403637-91403638	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
4	rs181481260	chr10:91403677-91403678	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	Overlapped CNVs	n/a
5	rs547923423	chr10:91403789-91403790	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
6	rs567785837	chr10:91403861-91403862	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
7	rs112691647	chr10:91403868-91403869	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
8	rs570392669	chr10:91403877-91403878	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
9	rs537839330	chr10:91403878-91403879	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
10	rs557830452	chr10:91403915-91403916	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
11	rs148392435	chr10:91403925-91403926	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
12	rs533651066	chr10:91403938-91403939	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
13	rs376151892	chr10:91403939-91403940	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
14	rs553902310	chr10:91403979-91403980	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
15	rs997456	chr10:91403980-91403981	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	20 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs185528228	chr10:91404090-91404091	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
17	rs556016186	chr10:91404118-91404119	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
18	rs142519482	chr10:91404127-91404128	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
19	rs146023885	chr10:91404144-91404145	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
20	rs565139135	chr10:91404146-91404147	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
21	rs552796762	chr10:91404147-91404148	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
22	rs73378990	chr10:91404176-91404177	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	18 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs561466688	chr10:91404203-91404204	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
24	rs530292971	chr10:91404205-91404206	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
25	rs550442415	chr10:91404250-91404251	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
26	rs570351998	chr10:91404264-91404265	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
27	rs532862033	chr10:91404289-91404290	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
28	rs551352895	chr10:91404312-91404313	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
29	rs571179099	chr10:91404334-91404335	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
30	rs200918734	chr10:91404342-91404343	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
31	rs201872439	chr10:91404346-91404347	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
32	rs201927435	chr10:91404388-91404389	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
33	rs367727112	chr10:91404393-91404394	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
34	rs567385024	chr10:91404397-91404398	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
35	rs112706599	chr10:91404408-91404409	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
36	rs35613000	chr10:91404416-91404417	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
37	rs536036844	chr10:91404437-91404438	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
38	rs371620126	chr10:91404443-91404444	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
39	rs11185826	chr10:91404448-91404449	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	10 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs544924571	chr10:91404470-91404471	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
41	rs370770872	chr10:91404471-91404472	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
42	rs558876223	chr10:91404490-91404491	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
43	rs371825552	chr10:91404574-91404575	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
44	rs572331960	chr10:91404644-91404645	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
45	rs541441847	chr10:91404645-91404646	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
46	rs561220592	chr10:91404646-91404647	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
47	rs530256020	chr10:91404662-91404663	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
48	rs369485815	chr10:91404715-91404716	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
49	rs201260143	chr10:91404726-91404727	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
50	rs114133850	chr10:91404729-91404730	Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:400 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:91395400-91403800	Weak transcription	Lung	lung
3	chr10:91396000-91403800	Weak transcription	Spleen	Spleen
4	chr10:91401000-91405200	Active TSS	GM12878-XiMat	blood
5	chr10:91401600-91405200	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:91401600-91405400	Active TSS	Fetal Kidney	kidney
7	chr10:91401800-91403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:91402000-91403600	Flanking Active TSS	Dnd41	blood
9	chr10:91402000-91405200	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr10:91402000-91405200	Active TSS	Liver	Liver
11	chr10:91402000-91405400	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:91402000-91405400	Active TSS	H1 Cell Line	embryonic stem cell
13	chr10:91402000-91405800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:91402200-91405200	Active TSS	Fetal Intestine Small	intestine
15	chr10:91402200-91405400	Active TSS	K562	blood
16	chr10:91402400-91405200	Active TSS	HepG2	liver
17	chr10:91402400-91405400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:91402600-91404200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr10:91402600-91405200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:91402600-91405200	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr10:91402600-91405400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:91402600-91405400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:91402800-91405200	Active TSS	HMEC	breast
24	chr10:91402800-91405200	Active TSS	NHLF	lung
25	chr10:91402800-91405400	Active TSS	Fetal Muscle Leg	muscle
26	chr10:91403000-91403600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr10:91403000-91404000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:91403000-91404200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:91403000-91404200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:91403000-91404400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:91403000-91404800	Active TSS	Right Atrium	heart
32	chr10:91403000-91405200	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr10:91403000-91405200	Active TSS	Fetal Intestine Large	intestine
34	chr10:91403000-91405200	Active TSS	Hela-S3	cervix
35	chr10:91403000-91405200	Active TSS	NHDF-Ad	bronchial
36	chr10:91403000-91405400	Active TSS	H9 Cell Line	embryonic stem cell
37	chr10:91403000-91405400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:91403000-91405400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:91403000-91405400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:91403000-91405400	Active TSS	Brain Germinal Matrix	brain
41	chr10:91403000-91405400	Active TSS	Psoas Muscle	Psoas
42	chr10:91403000-91405400	Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr10:91403000-91405600	Active TSS	Fetal Muscle Trunk	muscle
44	chr10:91403000-91405800	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr10:91403200-91403600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:91403200-91403600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr10:91403200-91403600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr10:91403200-91403600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr10:91403200-91403600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:91403200-91403600	Flanking Active TSS	Brain Angular Gyrus	brain

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