Variant report

Variant	rs546501995
Chromosome Location	chr10:91403637-91403638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:320)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:320 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:91403441-91404062	HepG2	liver:	n/a	n/a
2	BHLHE40	chr10:91403636-91404650	K562	blood:	n/a	n/a
3	POLR2A	chr10:91403400-91405426	ECC-1	luminal epithelium:	n/a	n/a
4	NFIC	chr10:91403355-91404197	HepG2	liver:	n/a	n/a
5	TAF1	chr10:91403621-91404302	MCF-7	breast:	n/a	n/a
6	SP1	chr10:91403364-91404211	HepG2	liver:	n/a	chr10:91403781-91403802 chr10:91403717-91403738
7	ELF1	chr10:91403579-91404082	GM12878	blood:	n/a	n/a
8	MXI1	chr10:91403283-91406204	HepG2	liver:	n/a	n/a
9	POLR2A	chr10:91403586-91405802	K562	blood:	n/a	n/a
10	TAF1	chr10:91403623-91404187	PFSK-1	brain:	n/a	n/a
11	EP300	chr10:91403554-91404076	H1-hESC	embryonic stem cell:	n/a	chr10:91403972-91403988
12	NFIC	chr10:91403491-91404092	GM12878	blood:	n/a	n/a
13	POLR2A	chr10:91403437-91405448	K562	blood:	n/a	n/a
14	TBL1XR1	chr10:91403257-91404363	K562	blood:	n/a	n/a
15	HDAC2	chr10:91403389-91403925	HepG2	liver:	n/a	n/a
16	WRNIP1	chr10:91403584-91404183	GM12878	blood:	n/a	n/a
17	CEBPB	chr10:91403432-91403977	IMR90	lung:	n/a	chr10:91403625-91403636
18	FOS	chr10:91403538-91403941	MCF10A-Er-Src	breast:	n/a	chr10:91403790-91403799
19	UBTF	chr10:91403448-91405324	K562	blood:	n/a	n/a
20	POLR2A	chr10:91403597-91405490	GM18951	blood:	n/a	n/a
21	TAF1	chr10:91403545-91404483	MCF-7	breast:	n/a	n/a
22	CREB1	chr10:91403583-91405549	GM12878	blood:	n/a	n/a
23	SETDB1	chr10:91403294-91404094	U2OS	brain:	n/a	n/a
24	MAX	chr10:91403457-91405754	A549	lung:	n/a	chr10:91405450-91405460
25	POLR2A	chr10:91403303-91404544	HepG2	liver:	n/a	n/a
26	USF2	chr10:91403600-91403991	H1-hESC	embryonic stem cell:	n/a	chr10:91403748-91403759
27	POLR2A	chr10:91403587-91405376	HUVEC	blood vessel:	n/a	n/a
28	CHD1	chr10:91403595-91405162	GM12878	blood:	n/a	n/a
29	SP1	chr10:91403414-91404426	HCT-116	colon:	n/a	chr10:91403781-91403802 chr10:91403717-91403738
30	ELK1	chr10:91403496-91403999	GM12878	blood:	n/a	n/a
31	CEBPD	chr10:91403516-91405139	HepG2	liver:	n/a	chr10:91403624-91403635
32	HDAC2	chr10:91403443-91404000	HepG2	liver:	n/a	n/a
33	FOXA2	chr10:91403384-91404134	HepG2	liver:	n/a	n/a
34	STAT1	chr10:91403631-91404112	GM12878	blood:	n/a	n/a
35	CUX1	chr10:91403286-91403668	GM12878	blood:	n/a	n/a
36	POLR2A	chr10:91403417-91404803	HepG2	liver:	n/a	n/a
37	MAX	chr10:91403560-91405896	K562	blood:	n/a	chr10:91405450-91405460
38	POLR2A	chr10:91403380-91405480	MCF10A-Er-Src	breast:	n/a	n/a
39	POLR2A	chr10:91403404-91405296	MCF10A-Er-Src	breast:	n/a	n/a
40	RELA	chr10:91403372-91405612	GM15510	blood:	n/a	n/a
41	MAZ	chr10:91403545-91404483	HepG2	liver:	n/a	n/a
42	TBP	chr10:91403154-91404491	Hela-S3	cervix:	n/a	n/a
43	POLR2A	chr10:91403300-91406084	HepG2	liver:	n/a	n/a
44	MAX	chr10:91403554-91405711	GM12878	blood:	n/a	chr10:91405450-91405460
45	CHD2	chr10:91403539-91404492	HepG2	liver:	n/a	n/a
46	FOS	chr10:91403538-91403870	MCF10A-Er-Src	breast:	n/a	chr10:91403790-91403799
47	MBD4	chr10:91403228-91404336	HepG2	liver:	n/a	n/a
48	POLR2A	chr10:91403289-91406020	HepG2	liver:	n/a	n/a
49	EP300	chr10:91403464-91404059	HepG2	liver:	n/a	chr10:91403972-91403988
50	SIN3A	chr10:91403486-91405487	GM12878	blood:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:91403635..91406711-chr10:91457604..91462894,9	MCF-7	breast:
2	chr10:91402369..91405488-chr10:91459565..91463449,8	K562	blood:
3	chr10:91403333..91404068-chr15:65588290..65588813,2	Hela-S3	cervix:
4	chr10:91371070..91374344-chr10:91402272..91406788,6	MCF-7	breast:
5	chr10:91369955..91372663-chr10:91402410..91404170,2	K562	blood:
6	chr10:91401983..91406312-chr10:91459063..91463449,10	K562	blood:
7	chr10:91402267..91405688-chr10:91407429..91411344,10	K562	blood:
8	chr10:91402561..91404356-chr12:56108835..56111046,2	MCF-7	breast:
9	chr10:91403504..91404306-chr7:91874779..91875485,2	NB4	blood:
10	chr10:91403572..91404172-chr19:49588652..49589213,2	Hela-S3	cervix:
11	chr10:91402715..91410625-chr10:91458897..91464646,18	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC16A12-1	chr10:91403454-91403713	NONHSAT015519

No data

Variant related genes	Relation type
PANK1	TF binding region
ENSG00000232936	TF binding region
ENSG00000104852	Chromatin interaction
ENSG00000138182	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000135424	Chromatin interaction
ENSG00000235100	Chromatin interaction
ENSG00000258311	Chromatin interaction
ENSG00000199568	Chromatin interaction
ENSG00000225836	Chromatin interaction
ENSG00000240996	Chromatin interaction
ENSG00000135441	Chromatin interaction
ENSG00000001631	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419628	chr10:91403597-91406145	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:91395400-91403800	Weak transcription	Lung	lung
3	chr10:91396000-91403800	Weak transcription	Spleen	Spleen
4	chr10:91401000-91405200	Active TSS	GM12878-XiMat	blood
5	chr10:91401600-91405200	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:91401600-91405400	Active TSS	Fetal Kidney	kidney
7	chr10:91401800-91403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:91402000-91405200	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr10:91402000-91405200	Active TSS	Liver	Liver
10	chr10:91402000-91405400	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr10:91402000-91405400	Active TSS	H1 Cell Line	embryonic stem cell
12	chr10:91402000-91405800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:91402200-91405200	Active TSS	Fetal Intestine Small	intestine
14	chr10:91402200-91405400	Active TSS	K562	blood
15	chr10:91402400-91405200	Active TSS	HepG2	liver
16	chr10:91402400-91405400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:91402600-91404200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr10:91402600-91405200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:91402600-91405200	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr10:91402600-91405400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:91402600-91405400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:91402800-91405200	Active TSS	HMEC	breast
23	chr10:91402800-91405200	Active TSS	NHLF	lung
24	chr10:91402800-91405400	Active TSS	Fetal Muscle Leg	muscle
25	chr10:91403000-91404000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:91403000-91404200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:91403000-91404200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:91403000-91404400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:91403000-91404800	Active TSS	Right Atrium	heart
30	chr10:91403000-91405200	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr10:91403000-91405200	Active TSS	Fetal Intestine Large	intestine
32	chr10:91403000-91405200	Active TSS	Hela-S3	cervix
33	chr10:91403000-91405200	Active TSS	NHDF-Ad	bronchial
34	chr10:91403000-91405400	Active TSS	H9 Cell Line	embryonic stem cell
35	chr10:91403000-91405400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:91403000-91405400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:91403000-91405400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:91403000-91405400	Active TSS	Brain Germinal Matrix	brain
39	chr10:91403000-91405400	Active TSS	Psoas Muscle	Psoas
40	chr10:91403000-91405400	Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr10:91403000-91405600	Active TSS	Fetal Muscle Trunk	muscle
42	chr10:91403000-91405800	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr10:91403200-91403800	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr10:91403200-91403800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr10:91403200-91404200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
46	chr10:91403200-91404200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr10:91403200-91404200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr10:91403200-91404200	Flanking Active TSS	HUVEC	blood vessel
49	chr10:91403200-91404200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr10:91403200-91404600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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