Variant report

Variant	rs2019783
Chromosome Location	chr8:95598598-95598599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1023766	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs1834525	0.83[ASN][1000 genomes]
rs1866845	0.81[JPT][hapmap]
rs2099788	0.81[JPT][hapmap]
rs2119460	0.81[JPT][hapmap]
rs2381830	0.81[ASN][1000 genomes]
rs3098708	0.81[JPT][hapmap]
rs3098712	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs3098718	0.81[JPT][hapmap]
rs3098725	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs3102851	0.81[ASN][1000 genomes]
rs3102874	0.81[JPT][hapmap]
rs3133601	0.83[ASN][1000 genomes]
rs3133622	0.80[CEU][hapmap];0.87[MEX][hapmap]
rs3133648	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs3133651	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs3133654	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs3133656	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs3133657	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs3133658	0.81[JPT][hapmap]
rs957446	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv429929	chr8:95564533-95676894	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv520435	chr8:95598598-95608367	Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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