Variant report

Variant	rs3133601
Chromosome Location	chr8:95589783-95589784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95588836..95591619-chr8:95651805..95654263,2	MCF-7	breast:
2	chr8:95589425..95590950-chr8:95650904..95653547,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104413	Chromatin interaction
ENSG00000261437	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1023766	0.86[ASN][1000 genomes]
rs1834525	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866845	0.86[ASN][1000 genomes]
rs2119460	0.82[ASN][1000 genomes]
rs2381830	0.95[ASN][1000 genomes]
rs2381831	0.88[ASN][1000 genomes]
rs3098707	0.93[ASN][1000 genomes]
rs3098708	0.91[ASN][1000 genomes]
rs3098709	0.93[ASN][1000 genomes]
rs3098712	0.93[ASN][1000 genomes]
rs3098716	0.86[ASN][1000 genomes]
rs3098718	0.86[ASN][1000 genomes]
rs3098719	0.86[ASN][1000 genomes]
rs3102841	0.82[ASN][1000 genomes]
rs3102847	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3102851	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3102859	0.86[ASN][1000 genomes]
rs3102862	0.82[ASN][1000 genomes]
rs3102874	0.93[ASN][1000 genomes]
rs3102875	0.84[ASN][1000 genomes]
rs3102877	0.92[ASN][1000 genomes]
rs3133640	0.80[ASN][1000 genomes]
rs3133645	0.86[ASN][1000 genomes]
rs3133648	0.86[ASN][1000 genomes]
rs3133649	0.86[ASN][1000 genomes]
rs3133651	0.88[ASN][1000 genomes]
rs3133654	0.93[ASN][1000 genomes]
rs3133656	0.93[ASN][1000 genomes]
rs3133657	0.93[ASN][1000 genomes]
rs3133658	0.93[ASN][1000 genomes]
rs62525105	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs957446	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv429929	chr8:95564533-95676894	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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