Variant report

Variant	rs3102862
Chromosome Location	chr8:95536482-95536483
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95536103..95541001-chr8:95541149..95546680,4	MCF-7	breast:
2	chr8:95533781..95536601-chr8:95538847..95541074,2	K562	blood:
3	chr8:95534517..95536607-chr8:95536674..95538361,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254315	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1023766	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1372047	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1834525	0.82[ASN][1000 genomes]
rs1866845	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2099788	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2119460	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2381830	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2381831	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3098707	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3098708	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3098709	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3098712	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3098715	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3098716	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3098718	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3098719	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3098725	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3099403	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3099404	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3099406	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3099407	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3099412	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3099413	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3102841	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3102845	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3102855	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3102859	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3102874	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102875	0.86[AMR][1000 genomes]
rs3102877	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3133601	0.82[ASN][1000 genomes]
rs3133635	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3133637	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3133640	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3133645	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133648	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133649	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133651	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3133654	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3133656	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3133657	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3133658	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs957446	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv611750	chr8:95519205-95574634	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95493000-95549200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:95495200-95538400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:95495600-95541000	Weak transcription	Esophagus	oesophagus
4	chr8:95497200-95564200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:95498400-95554000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:95499400-95552200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:95501200-95541000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:95516800-95554600	Strong transcription	Fetal Thymus	thymus
9	chr8:95517600-95538600	Weak transcription	Fetal Brain Male	brain
10	chr8:95517600-95540200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:95520400-95555200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr8:95520600-95552400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:95523800-95536800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr8:95523800-95539200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:95524000-95538200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:95524000-95540400	Weak transcription	Colonic Mucosa	Colon
17	chr8:95525200-95538200	Weak transcription	Brain Substantia Nigra	brain
18	chr8:95527600-95548600	Strong transcription	Fetal Muscle Leg	muscle
19	chr8:95528000-95542400	Weak transcription	Pancreas	Pancrea
20	chr8:95528400-95538400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:95528400-95540800	Weak transcription	Spleen	Spleen
22	chr8:95528400-95541200	Weak transcription	Right Ventricle	heart
23	chr8:95528400-95542400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:95531000-95537000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:95531000-95537000	Weak transcription	Fetal Brain Female	brain
26	chr8:95531400-95537000	Weak transcription	Hela-S3	cervix
27	chr8:95531400-95537400	Weak transcription	Brain Angular Gyrus	brain
28	chr8:95531600-95536800	Weak transcription	Brain Germinal Matrix	brain
29	chr8:95531600-95536800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:95531600-95537000	Weak transcription	Fetal Kidney	kidney
31	chr8:95531600-95537000	Weak transcription	A549	lung
32	chr8:95531600-95537000	Weak transcription	HSMMtube	muscle
33	chr8:95531600-95537000	Weak transcription	NHLF	lung
34	chr8:95531600-95537200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr8:95531600-95537200	Weak transcription	Left Ventricle	heart
36	chr8:95531600-95538600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr8:95531600-95540200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr8:95531600-95540800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr8:95531800-95537000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:95531800-95537000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:95531800-95537000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr8:95531800-95537000	Weak transcription	Fetal Lung	lung
43	chr8:95531800-95537400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr8:95531800-95537400	Weak transcription	NH-A	brain
45	chr8:95531800-95537800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr8:95531800-95538400	Weak transcription	Aorta	Aorta
47	chr8:95531800-95538600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr8:95532000-95536800	Weak transcription	HSMM	muscle
49	chr8:95532000-95537000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr8:95532000-95537200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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