Variant report

Variant	rs3102841
Chromosome Location	chr8:95519205-95519206
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95484689..95488036-chr8:95515578..95521177,5	K562	blood:
2	chr8:95518061..95519974-chr8:95527304..95530203,2	MCF-7	breast:
3	chr8:95518541..95520743-chr8:95526847..95528713,2	K562	blood:

Variant related genes	Relation type
ENSG00000197275	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1023766	0.81[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.83[MKK][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1372047	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1834525	0.82[ASN][1000 genomes]
rs1866845	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2046666	1.00[CHB][hapmap]
rs2099788	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2119460	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2246066	1.00[CHB][hapmap]
rs2381830	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2381831	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2445721	1.00[CHB][hapmap]
rs2450558	1.00[CHB][hapmap]
rs2470739	1.00[CHB][hapmap]
rs2470740	1.00[CHB][hapmap]
rs2470742	1.00[CHB][hapmap]
rs2515100	1.00[CHB][hapmap]
rs2515153	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs2515165	1.00[CHB][hapmap]
rs2919654	1.00[CHB][hapmap]
rs2921385	1.00[CHB][hapmap]
rs2921387	1.00[CHB][hapmap]
rs2930967	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs2930969	1.00[CHB][hapmap]
rs3098707	0.88[ASN][1000 genomes]
rs3098708	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs3098709	0.88[ASN][1000 genomes]
rs3098712	0.81[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3098715	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3098716	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3098718	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3098719	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3098725	1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3099398	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs3099403	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3099404	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3099406	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3099407	1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.82[EUR][1000 genomes]
rs3099412	1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3102845	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3102855	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3102859	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3102862	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3102874	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3102877	0.87[ASN][1000 genomes]
rs3133601	0.82[ASN][1000 genomes]
rs3133635	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3133637	0.81[EUR][1000 genomes]
rs3133640	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3133645	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133648	0.82[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.80[TSI][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133649	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133651	1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3133654	1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3133656	0.81[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.83[MKK][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3133657	0.81[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3133658	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs935052	1.00[CHB][hapmap]
rs957446	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv611750	chr8:95519205-95574634	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3102841	ESRP1	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95493000-95549200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:95495200-95538400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:95495600-95541000	Weak transcription	Esophagus	oesophagus
4	chr8:95497200-95564200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:95498400-95554000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:95499400-95533400	Strong transcription	Placenta	Placenta
7	chr8:95499400-95552200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:95500400-95524600	Weak transcription	Stomach Mucosa	stomach
9	chr8:95501200-95541000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:95504000-95521800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:95504000-95522000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr8:95504400-95523400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:95505600-95521600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr8:95506000-95522000	Weak transcription	HMEC	breast
15	chr8:95508800-95522600	Weak transcription	Brain Substantia Nigra	brain
16	chr8:95509000-95522000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr8:95509600-95522000	Weak transcription	NHEK	skin
18	chr8:95511000-95527400	Weak transcription	Pancreas	Pancrea
19	chr8:95511200-95527400	Weak transcription	Gastric	stomach
20	chr8:95511200-95530600	Weak transcription	Aorta	Aorta
21	chr8:95511600-95522600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:95511800-95521200	Weak transcription	HepG2	liver
23	chr8:95512200-95522000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr8:95512600-95524600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:95512600-95527800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:95513000-95521800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:95513600-95530000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr8:95514600-95519800	Weak transcription	Fetal Intestine Small	intestine
29	chr8:95515000-95527600	Weak transcription	Ovary	ovary
30	chr8:95515600-95521800	Weak transcription	Fetal Kidney	kidney
31	chr8:95515600-95534200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr8:95516000-95521000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr8:95516200-95534000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:95516800-95554600	Strong transcription	Fetal Thymus	thymus
35	chr8:95517000-95519400	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr8:95517200-95523000	Weak transcription	Colonic Mucosa	Colon
37	chr8:95517200-95530400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:95517400-95520600	Weak transcription	Brain Anterior Caudate	brain
39	chr8:95517400-95527600	Weak transcription	Spleen	Spleen
40	chr8:95517400-95528000	Weak transcription	Right Ventricle	heart
41	chr8:95517600-95520600	Weak transcription	Brain Hippocampus Middle	brain
42	chr8:95517600-95520600	Weak transcription	HSMMtube	muscle
43	chr8:95517600-95520800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr8:95517600-95522400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr8:95517600-95522600	Weak transcription	Lung	lung
46	chr8:95517600-95522600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr8:95517600-95538600	Weak transcription	Fetal Brain Male	brain
48	chr8:95517600-95540200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr8:95517800-95520400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr8:95517800-95521000	Weak transcription	Brain Germinal Matrix	brain

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