Variant report

Variant	rs202015
Chromosome Location	chr8:39621517-39621518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1376728	0.80[AFR][1000 genomes]
rs1451744	0.88[AFR][1000 genomes]
rs1901387	0.90[AFR][1000 genomes]
rs202002	0.90[AFR][1000 genomes]
rs202005	0.87[AFR][1000 genomes]
rs202008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs202009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs202010	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2122991	0.88[AFR][1000 genomes]
rs3974327	0.84[AFR][1000 genomes]
rs453419	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs896472	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015907	chr8:38967169-39718559	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv539550	chr8:38967169-39718559	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv890833	chr8:39405337-39664696	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv890836	chr8:39480366-39650940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv890839	chr8:39553261-39664696	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv890840	chr8:39597328-39664696	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39620800-39621800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:39620800-39622200	Enhancers	Fetal Intestine Large	intestine
3	chr8:39620800-39622200	Enhancers	Fetal Intestine Small	intestine
4	chr8:39621000-39622000	Enhancers	HepG2	liver
5	chr8:39621000-39622200	Enhancers	Duodenum Mucosa	Duodenum
6	chr8:39621200-39622200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:39621400-39622000	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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