Variant report
| Variant | rs896472 |
|---|---|
| Chromosome Location | chr8:39659104-39659105 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10096592 | 1.00[EUR][1000 genomes] |
| rs10096983 | 1.00[EUR][1000 genomes] |
| rs11989147 | 1.00[EUR][1000 genomes] |
| rs11990694 | 1.00[EUR][1000 genomes] |
| rs11996873 | 1.00[EUR][1000 genomes] |
| rs1376728 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1451737 | 1.00[EUR][1000 genomes] |
| rs1451744 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1901387 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs202002 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs202005 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs202008 | 0.84[AFR][1000 genomes] |
| rs202009 | 0.84[AFR][1000 genomes] |
| rs202015 | 0.84[AFR][1000 genomes] |
| rs2122991 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3974327 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs453419 | 0.81[AFR][1000 genomes] |
| rs57403655 | 1.00[EUR][1000 genomes] |
| rs6983759 | 1.00[EUR][1000 genomes] |
| rs6987500 | 1.00[EUR][1000 genomes] |
| rs7005051 | 1.00[EUR][1000 genomes] |
| rs7836547 | 1.00[EUR][1000 genomes] |
| rs7837269 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015907 | chr8:38967169-39718559 | Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv539550 | chr8:38967169-39718559 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv890833 | chr8:39405337-39664696 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv890839 | chr8:39553261-39664696 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv890840 | chr8:39597328-39664696 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:39647800-39659200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr8:39659000-39659800 | Enhancers | H1 Cell Line | embryonic stem cell |
