Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10096592	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11989147	1.00[EUR][1000 genomes]
rs11990694	1.00[EUR][1000 genomes]
rs11996873	1.00[EUR][1000 genomes]
rs1376728	1.00[EUR][1000 genomes]
rs1451737	1.00[EUR][1000 genomes]
rs1451744	1.00[EUR][1000 genomes]
rs1901387	1.00[EUR][1000 genomes]
rs202002	1.00[EUR][1000 genomes]
rs202005	1.00[EUR][1000 genomes]
rs2122991	1.00[EUR][1000 genomes]
rs3974327	1.00[EUR][1000 genomes]
rs57403655	1.00[EUR][1000 genomes]
rs6983759	1.00[EUR][1000 genomes]
rs6987500	1.00[EUR][1000 genomes]
rs7005051	1.00[EUR][1000 genomes]
rs7836547	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7837269	1.00[EUR][1000 genomes]
rs896472	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39717000-39720800	Enhancers	HUVEC	blood vessel
2	chr8:39718000-39721000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:39718000-39722400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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