Variant report

Variant	rs11990694
Chromosome Location	chr8:39819722-39819723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10096592	1.00[EUR][1000 genomes]
rs10096983	1.00[EUR][1000 genomes]
rs11988447	1.00[EUR][1000 genomes]
rs11989147	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11996873	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1376728	1.00[EUR][1000 genomes]
rs1451744	1.00[EUR][1000 genomes]
rs1901387	1.00[EUR][1000 genomes]
rs202002	1.00[EUR][1000 genomes]
rs202005	1.00[EUR][1000 genomes]
rs2122991	1.00[EUR][1000 genomes]
rs3974327	1.00[EUR][1000 genomes]
rs6983759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7826274	1.00[AMR][1000 genomes]
rs7836547	1.00[EUR][1000 genomes]
rs896472	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39818200-39824400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:39818600-39819800	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:39819000-39821200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:39819200-39820400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:39819200-39820600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:39819400-39820200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:39819600-39820000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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