Variant report

Variant	rs202031862
Chromosome Location	chr20:24759096-24759097
allele	-/GT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24751479..24753898-chr20:24757094..24759323,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1061455	chr20:24733120-24861801	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv544218	chr20:24733120-24861801	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1059270	chr20:24741923-24787243	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv20575	chr20:24758946-24759790	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24749200-24763600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:24751000-24761200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24753400-24761200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr20:24757600-24759400	Weak transcription	HMEC	breast
5	chr20:24757800-24766600	Enhancers	Fetal Thymus	thymus
6	chr20:24758400-24759200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr20:24758400-24759800	Enhancers	Brain Cingulate Gyrus	brain
8	chr20:24758400-24760200	Enhancers	Brain Hippocampus Middle	brain
9	chr20:24758400-24766800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr20:24758600-24759400	Weak transcription	A549	lung
11	chr20:24758600-24759800	Enhancers	Esophagus	oesophagus
12	chr20:24758600-24759800	Enhancers	Pancreas	Pancrea
13	chr20:24758600-24760800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr20:24758600-24761400	Enhancers	Fetal Muscle Trunk	muscle
15	chr20:24758600-24762400	Enhancers	Primary hematopoietic stem cells	blood
16	chr20:24758600-24763800	Enhancers	Fetal Muscle Leg	muscle
17	chr20:24758800-24760800	Enhancers	Spleen	Spleen
18	chr20:24758800-24762400	Enhancers	Thymus	Thymus
19	chr20:24758800-24767400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr20:24759000-24759200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
21	chr20:24759000-24759400	Enhancers	HSMMtube	muscle
22	chr20:24759000-24759600	Bivalent Enhancer	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links