Variant report

Variant	rs202146763
Chromosome Location	chr15:49529646-49529647
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr15:49527148-49529664	SK-N-SH	brain:	n/a	chr15:49527963-49527982 chr15:49527968-49527980 chr15:49527967-49527976
2	EP300	chr15:49528810-49529738	SK-N-SH	brain:	n/a	chr15:49529630-49529644 chr15:49528939-49528949 chr15:49529129-49529143
3	CEBPB	chr15:49529623-49529721	K562	blood:	n/a	chr15:49529629-49529642 chr15:49529629-49529642 chr15:49529631-49529642

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49527986..49530632-chr15:49532231..49535128,2	K562	blood:
2	chr15:49527930..49530105-chr15:49533812..49536591,2	MCF-7	breast:

Variant related genes	Relation type
GALK2	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv569340	chr15:49529302-49547735	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv569341	chr15:49529302-49547790	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv569342	chr15:49529302-49549943	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
2	chr15:49487200-49531200	Weak transcription	HMEC	breast
3	chr15:49492000-49530200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:49492000-49539400	Weak transcription	Small Intestine	intestine
5	chr15:49504200-49530800	Weak transcription	Fetal Thymus	thymus
6	chr15:49508800-49535800	Weak transcription	A549	lung
7	chr15:49510000-49541800	Weak transcription	NHEK	skin
8	chr15:49510200-49537000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:49510800-49534400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:49511400-49530600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:49511800-49531400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:49511800-49532200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:49516000-49531400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:49518000-49535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:49518000-49541000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:49518200-49548600	Weak transcription	Aorta	Aorta
17	chr15:49518600-49532000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:49518600-49557600	Weak transcription	Esophagus	oesophagus
19	chr15:49518800-49539200	Weak transcription	Ovary	ovary
20	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
21	chr15:49520600-49531200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:49520800-49531400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:49522000-49534600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr15:49522000-49537800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr15:49522000-49538200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr15:49522000-49540400	Weak transcription	Stomach Mucosa	stomach
27	chr15:49522200-49531400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr15:49522200-49535000	Weak transcription	Left Ventricle	heart
29	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
30	chr15:49522600-49534400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:49522600-49535200	Weak transcription	Gastric	stomach
32	chr15:49522800-49531400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:49523800-49534800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:49523800-49540200	Weak transcription	Spleen	Spleen
35	chr15:49524400-49530800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr15:49524600-49531400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr15:49524600-49531400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr15:49524600-49531400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr15:49524600-49535200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:49524600-49535200	Weak transcription	Placenta	Placenta
41	chr15:49524600-49535200	Weak transcription	Thymus	Thymus
42	chr15:49524600-49539200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:49524600-49544800	Weak transcription	Lung	lung
44	chr15:49524800-49530200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:49524800-49530600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:49524800-49530600	Weak transcription	Liver	Liver
47	chr15:49524800-49531400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr15:49525000-49530200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:49525000-49531400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr15:49525000-49534600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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