Variant report

Variant	rs2022421
Chromosome Location	chr6:46021435-46021436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46020952..46023799-chr6:46028672..46030692,2	MCF-7	breast:
2	chr6:46010679..46013436-chr6:46019220..46021505,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9395145	0.90[TSI][hapmap]
rs9395148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46017800-46021800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:46018000-46022200	Enhancers	NHDF-Ad	bronchial
3	chr6:46018000-46024200	Enhancers	Fetal Intestine Large	intestine
4	chr6:46018600-46022200	Enhancers	Psoas Muscle	Psoas
5	chr6:46018800-46022200	Enhancers	HSMM	muscle
6	chr6:46018800-46023200	Enhancers	Fetal Intestine Small	intestine
7	chr6:46019000-46022000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:46019000-46023800	Enhancers	Duodenum Mucosa	Duodenum
9	chr6:46019200-46022600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:46019600-46021600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:46019600-46022200	Enhancers	Right Atrium	heart
12	chr6:46019600-46022200	Enhancers	HSMMtube	muscle
13	chr6:46019600-46022800	Enhancers	Adipose Nuclei	Adipose
14	chr6:46020200-46022200	Enhancers	Right Ventricle	heart
15	chr6:46020200-46022800	Enhancers	Left Ventricle	heart
16	chr6:46020200-46023000	Enhancers	Small Intestine	intestine
17	chr6:46020400-46022000	Enhancers	Liver	Liver
18	chr6:46020400-46022000	Enhancers	Fetal Muscle Leg	muscle
19	chr6:46020400-46022400	Enhancers	Placenta	Placenta
20	chr6:46020400-46023600	Enhancers	Colonic Mucosa	Colon
21	chr6:46020800-46021800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:46020800-46021800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr6:46021000-46021800	Weak transcription	Lung	lung
24	chr6:46021000-46022800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:46021200-46021600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr6:46021200-46021600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:46021200-46021600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:46021400-46021600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr6:46021400-46021600	Enhancers	Fetal Heart	heart
30	chr6:46021400-46021800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:46021400-46021800	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr6:46021400-46021800	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links