Variant report

Variant	rs9395148
Chromosome Location	chr6:46025551-46025552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2022421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46022200-46026600	Weak transcription	Psoas Muscle	Psoas
2	chr6:46022200-46026800	Weak transcription	Right Atrium	heart
3	chr6:46022200-46027200	Weak transcription	Right Ventricle	heart
4	chr6:46022400-46027200	Weak transcription	Fetal Heart	heart
5	chr6:46022800-46026400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:46022800-46026800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:46022800-46027000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:46022800-46027200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:46022800-46028400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:46023800-46028600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:46024000-46025600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:46024000-46025600	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr6:46024400-46026800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:46024400-46027200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:46024600-46027000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:46024800-46027000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:46025000-46025800	Enhancers	Fetal Intestine Large	intestine
18	chr6:46025000-46026400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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