Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1008516	0.80[ASN][1000 genomes]
rs10447536	0.82[JPT][hapmap]
rs11763822	0.85[JPT][hapmap]
rs11766067	0.82[JPT][hapmap]
rs11769248	0.85[JPT][hapmap]
rs17340451	0.82[JPT][hapmap]
rs17340639	0.82[JPT][hapmap]
rs17424992	0.82[JPT][hapmap]
rs17425888	0.85[JPT][hapmap]
rs2023988	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2158656	0.85[JPT][hapmap]
rs2867559	0.82[JPT][hapmap]
rs35027961	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6944606	0.85[JPT][hapmap]
rs6946044	0.82[JPT][hapmap]
rs6961327	0.82[JPT][hapmap]
rs6965098	0.85[JPT][hapmap]
rs6965965	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6968074	0.85[JPT][hapmap]
rs726469	0.82[JPT][hapmap]
rs733909	0.85[JPT][hapmap]
rs769022	0.82[JPT][hapmap]
rs7776793	0.85[JPT][hapmap]
rs7790027	0.83[CHB][hapmap]
rs7804471	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71309200-71326600	Weak transcription	Fetal Thymus	thymus
2	chr7:71309200-71333200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:71309200-71335800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:71310600-71324400	Weak transcription	Thymus	Thymus
5	chr7:71312800-71313400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:71312800-71313600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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