Variant report

Variant	rs10447536
Chromosome Location	chr7:71329879-71329880
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1008516	0.87[EUR][1000 genomes]
rs10950286	0.94[GIH][hapmap];0.84[TSI][hapmap]
rs11763822	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765964	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11766067	0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11766746	1.00[JPT][hapmap]
rs11769248	1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs11771138	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11773010	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12537432	1.00[JPT][hapmap]
rs12537492	0.82[JPT][hapmap]
rs12699105	0.87[EUR][1000 genomes]
rs13230356	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17144059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17340451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17340639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17424992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17425888	1.00[JPT][hapmap]
rs2023987	0.82[JPT][hapmap]
rs2023988	0.88[CHD][hapmap]
rs2051883	0.80[ASN][1000 genomes]
rs2051884	0.80[ASN][1000 genomes]
rs2158656	1.00[JPT][hapmap]
rs2190049	0.85[EUR][1000 genomes]
rs2867559	0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs34799278	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34861101	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35182247	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35210461	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35591931	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35971359	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35972568	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35991621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36068297	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55832140	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56317682	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56341267	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56890305	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57182240	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57324681	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57704013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58040485	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58146246	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59411355	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60408127	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66494751	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67293403	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67366811	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67473470	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67943706	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6944606	1.00[JPT][hapmap]
rs6946044	0.89[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.80[ASN][1000 genomes]
rs6948935	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6956808	0.80[ASN][1000 genomes]
rs6961118	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6961327	1.00[JPT][hapmap]
rs6965098	1.00[JPT][hapmap]
rs6967264	0.80[ASN][1000 genomes]
rs6968074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6969870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs726469	0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs73185015	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73185028	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs733909	1.00[JPT][hapmap]
rs7349979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.96[TSI][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs769022	0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7776793	1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv981775	chr7:71327677-71338879	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10447536	CLIP2	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71309200-71333200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:71309200-71335800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:71313400-71330000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:71320800-71336400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:71324800-71330000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:71328200-71333600	Weak transcription	Fetal Thymus	thymus
7	chr7:71329200-71330000	Strong transcription	Thymus	Thymus
8	chr7:71329400-71340800	Weak transcription	Right Atrium	heart

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