Variant report

Variant	rs55832140
Chromosome Location	chr7:71344110-71344111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10447536	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11763822	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11765964	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11766067	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11769248	0.91[AMR][1000 genomes]
rs11771138	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11773010	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13230356	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17144059	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17340451	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17340639	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17424992	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34799278	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34861101	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35182247	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35210461	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35591931	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35971359	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35972568	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35991621	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36068297	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56317682	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56341267	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56890305	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57182240	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57324681	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57704013	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58040485	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58146246	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59411355	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60408127	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66494751	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67293403	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67366811	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67473470	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67943706	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6948935	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6956922	0.81[AFR][1000 genomes]
rs6961118	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6968074	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6969870	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73185015	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73185028	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7349979	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv1017367	chr7:71339782-71476575	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71341800-71350600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:71342000-71345200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:71343600-71344600	Enhancers	Dnd41	blood
4	chr7:71343800-71345200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:71343800-71347000	Strong transcription	Thymus	Thymus
6	chr7:71344000-71344600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:71344000-71344600	Weak transcription	Fetal Thymus	thymus

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