Variant report

Variant	rs7349979
Chromosome Location	chr7:71336068-71336069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:71334378..71336604-chr7:71338899..71340825,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1008516	0.85[EUR][1000 genomes]
rs10447536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.96[TSI][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10950286	0.88[GIH][hapmap];0.85[JPT][hapmap];0.87[TSI][hapmap]
rs11763822	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11765964	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11766067	0.86[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap]
rs11766746	0.82[JPT][hapmap]
rs11769248	0.82[JPT][hapmap]
rs11771138	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11773010	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12537432	0.82[JPT][hapmap]
rs12537492	1.00[JPT][hapmap]
rs12699105	0.85[EUR][1000 genomes]
rs13230356	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16869589	0.85[JPT][hapmap]
rs17144059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17340451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.93[LWK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17340639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17424992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17425888	0.82[JPT][hapmap]
rs2023988	0.88[CHD][hapmap]
rs2051884	0.88[AMR][1000 genomes]
rs2158656	0.82[JPT][hapmap]
rs2190049	0.83[EUR][1000 genomes]
rs2867559	0.88[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap]
rs34799278	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34861101	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35182247	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35210461	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35591931	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35971359	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35972568	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35991621	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36068297	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55832140	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56317682	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56341267	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56890305	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57182240	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57324681	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57704013	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58040485	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58146246	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59411355	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60408127	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66494751	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67293403	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67366811	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67473470	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67943706	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6944606	0.82[JPT][hapmap]
rs6946044	0.89[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap]
rs6948935	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6956808	0.88[AMR][1000 genomes]
rs6961118	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6961327	0.82[JPT][hapmap]
rs6965098	0.82[JPT][hapmap]
rs6968074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6969870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs726469	0.86[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap]
rs73185015	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73185028	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs733909	0.82[JPT][hapmap]
rs769022	0.86[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.80[TSI][hapmap]
rs7776793	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv981775	chr7:71327677-71338879	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7349979	CLIP2	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71320800-71336400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:71329400-71340800	Weak transcription	Right Atrium	heart
3	chr7:71330000-71341200	Weak transcription	Thymus	Thymus
4	chr7:71332600-71336800	Enhancers	Dnd41	blood
5	chr7:71333200-71336600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:71333600-71336400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:71335400-71336200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr7:71335800-71336600	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:71335800-71337000	Enhancers	Fetal Thymus	thymus

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