Variant report

Variant	rs2024609
Chromosome Location	chr20:24614311-24614312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24612466..24614630-chr20:24629800..24632618,2	MCF-7	breast:
2	chr20:24611712..24613428-chr20:24614096..24616788,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73345377	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73345394	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8119899	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv912824	chr20:24612808-24639916	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24608600-24615000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr20:24608800-24616800	Enhancers	Brain Hippocampus Middle	brain
3	chr20:24609200-24615200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr20:24610400-24615600	Weak transcription	Right Atrium	heart
5	chr20:24610600-24615000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr20:24610600-24615600	Weak transcription	Right Ventricle	heart
7	chr20:24610800-24615600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr20:24610800-24615600	Weak transcription	Thymus	Thymus
9	chr20:24611000-24615200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr20:24611000-24615400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr20:24611400-24614400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr20:24611400-24614400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr20:24611400-24615400	Weak transcription	Fetal Thymus	thymus
14	chr20:24612600-24614600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr20:24612800-24614800	Weak transcription	Brain Angular Gyrus	brain
16	chr20:24613000-24615200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr20:24613400-24614400	Enhancers	HSMM	muscle
18	chr20:24613400-24615000	Enhancers	NHEK	skin
19	chr20:24613400-24616200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr20:24613400-24616200	Enhancers	HMEC	breast
21	chr20:24613400-24616200	Enhancers	NH-A	brain
22	chr20:24613400-24616600	Enhancers	Brain Substantia Nigra	brain
23	chr20:24613400-24618000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr20:24613600-24615800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr20:24613600-24616200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr20:24613800-24614600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr20:24613800-24614600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr20:24613800-24614600	Enhancers	Esophagus	oesophagus
29	chr20:24613800-24614600	Enhancers	Left Ventricle	heart
30	chr20:24613800-24614600	Enhancers	Lung	lung
31	chr20:24613800-24614800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr20:24613800-24616000	Enhancers	Brain Anterior Caudate	brain
33	chr20:24613800-24616000	Enhancers	NHDF-Ad	bronchial
34	chr20:24613800-24616200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr20:24613800-24616200	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr20:24613800-24618000	Enhancers	H9 Cell Line	embryonic stem cell
37	chr20:24614000-24614400	Bivalent Enhancer	Fetal Stomach	stomach
38	chr20:24614000-24614800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr20:24614000-24614800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr20:24614000-24615200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr20:24614000-24615200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr20:24614000-24615200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr20:24614000-24615600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr20:24614000-24616000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr20:24614000-24619400	Weak transcription	Gastric	stomach
46	chr20:24614200-24614400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr20:24614200-24615400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr20:24614200-24615400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr20:24614200-24619200	Weak transcription	Aorta	Aorta

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