Variant report

Variant	rs2024746
Chromosome Location	chr20:23356862-23356863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23342744..23345940-chr20:23355665..23360192,5	K562	blood:
2	chr20:23341905..23344244-chr20:23356684..23358991,2	K562	blood:

Variant related genes	Relation type
ENSG00000125812	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1016628	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12349	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1419007	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2180139	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2236023	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2243448	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2253834	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2281431	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2295239	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424527	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2424542	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2424555	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3746736	0.80[EUR][1000 genomes]
rs4142246	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4815198	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048750	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048760	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048779	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6048781	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048784	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076055	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083114	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6083127	0.81[EUR][1000 genomes]
rs6137933	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs761723	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs999068	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2024746	NAPB	cis	Skin Sun Exposed Lower leg	GTEx
rs2024746	NAPB	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23344000-23392600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:23344800-23362400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr20:23345000-23361800	Strong transcription	Fetal Thymus	thymus
4	chr20:23345000-23362000	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr20:23345000-23362600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr20:23346600-23363200	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr20:23346800-23362600	Weak transcription	Right Atrium	heart
8	chr20:23347200-23362400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr20:23347400-23362000	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr20:23347600-23358600	Strong transcription	Primary T cells from cord blood	blood
11	chr20:23347800-23362000	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr20:23347800-23362200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr20:23347800-23362600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr20:23348000-23374200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr20:23348200-23384800	Weak transcription	Stomach Mucosa	stomach
16	chr20:23348400-23358200	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr20:23348400-23362000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr20:23348600-23358800	Strong transcription	Primary B cells from peripheral blood	blood
19	chr20:23348600-23362400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr20:23348600-23363000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr20:23348800-23358000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr20:23348800-23358200	Strong transcription	NH-A	brain
23	chr20:23348800-23362000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr20:23348800-23363000	Strong transcription	GM12878-XiMat	blood
25	chr20:23348800-23366400	Strong transcription	Dnd41	blood
26	chr20:23349000-23358800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr20:23349200-23359000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr20:23349200-23359000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr20:23349200-23359200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr20:23349200-23359400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr20:23349200-23360400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr20:23349200-23363000	Strong transcription	Adipose Nuclei	Adipose
33	chr20:23349400-23358000	Strong transcription	Brain Cingulate Gyrus	brain
34	chr20:23349400-23358000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr20:23349400-23358200	Strong transcription	Primary hematopoietic stem cells	blood
36	chr20:23349400-23358200	Strong transcription	Fetal Brain Female	brain
37	chr20:23349400-23358200	Strong transcription	Fetal Intestine Large	intestine
38	chr20:23349400-23358800	Strong transcription	Left Ventricle	heart
39	chr20:23349400-23359000	Strong transcription	Fetal Muscle Leg	muscle
40	chr20:23349400-23363200	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr20:23349600-23357800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr20:23349600-23358000	Strong transcription	K562	blood
43	chr20:23349600-23358200	Strong transcription	NHDF-Ad	bronchial
44	chr20:23349600-23358600	Strong transcription	HSMM	muscle
45	chr20:23349600-23358800	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr20:23349600-23358800	Strong transcription	Stomach Smooth Muscle	stomach
47	chr20:23349600-23358800	Strong transcription	NHLF	lung
48	chr20:23349600-23359000	Strong transcription	Brain Anterior Caudate	brain
49	chr20:23349600-23359000	Strong transcription	Duodenum Mucosa	Duodenum
50	chr20:23349600-23363600	Strong transcription	Liver	Liver

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