Variant report

Variant	rs2025060
Chromosome Location	chr14:39411367-39411368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39409994..39412907-chr14:39426330..39428595,2	MCF-7	breast:
2	chr14:39410789..39411608-chr14:39483894..39485313,6	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1007415	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10134739	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1028591	0.84[ASN][1000 genomes]
rs1040836	0.84[ASN][1000 genomes]
rs12883114	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs12883946	0.84[ASN][1000 genomes]
rs12885731	0.90[ASN][1000 genomes]
rs12887605	0.84[ASN][1000 genomes]
rs12895569	0.82[ASN][1000 genomes]
rs17607605	0.84[ASN][1000 genomes]
rs17616347	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs17617123	0.81[CHB][hapmap]
rs17670531	0.84[ASN][1000 genomes]
rs17676972	0.82[ASN][1000 genomes]
rs1884383	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs1885143	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1950508	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1951226	0.81[ASN][1000 genomes]
rs1960796	0.84[ASN][1000 genomes]
rs2025062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144526	0.82[ASN][1000 genomes]
rs2144527	0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs34292075	0.84[ASN][1000 genomes]
rs35873738	0.84[ASN][1000 genomes]
rs35976812	0.86[ASN][1000 genomes]
rs61338087	0.84[ASN][1000 genomes]
rs6571879	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6571880	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7140282	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs7143056	0.84[ASN][1000 genomes]
rs7143370	0.82[ASN][1000 genomes]
rs7145856	0.81[CHB][hapmap]
rs7151407	0.82[ASN][1000 genomes]
rs7154223	0.82[ASN][1000 genomes]
rs743222	0.88[ASN][1000 genomes]
rs7493678	0.83[ASN][1000 genomes]
rs8007240	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs8020013	0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs8020321	0.91[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv901656	chr14:39370726-39423339	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv901657	chr14:39410706-39460072	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39406000-39412600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:39409200-39412000	Weak transcription	Brain Hippocampus Middle	brain
3	chr14:39409200-39412200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:39410200-39412400	Weak transcription	Brain Substantia Nigra	brain
5	chr14:39411200-39411400	Enhancers	Brain Anterior Caudate	brain

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