Variant report

Variant	rs2025064
Chromosome Location	chr14:39416659-39416660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10134654	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs10137988	0.82[ASN][1000 genomes]
rs12434593	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434847	0.82[ASN][1000 genomes]
rs12437031	0.82[ASN][1000 genomes]
rs12437346	0.82[ASN][1000 genomes]
rs12878789	0.82[ASN][1000 genomes]
rs12890771	0.82[ASN][1000 genomes]
rs1964857	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28367031	0.82[ASN][1000 genomes]
rs35287240	0.81[ASN][1000 genomes]
rs4902259	0.82[ASN][1000 genomes]
rs975521	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv901656	chr14:39370726-39423339	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv901657	chr14:39410706-39460072	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39412800-39417800	Weak transcription	Left Ventricle	heart
2	chr14:39414200-39433600	Weak transcription	Brain Angular Gyrus	brain
3	chr14:39415600-39417800	Active TSS	Brain Anterior Caudate	brain
4	chr14:39416200-39416800	Active TSS	Brain Cingulate Gyrus	brain
5	chr14:39416200-39416800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
6	chr14:39416200-39416800	Flanking Active TSS	Brain Substantia Nigra	brain
7	chr14:39416400-39418400	Enhancers	HMEC	breast
8	chr14:39416600-39417600	Active TSS	Brain Hippocampus Middle	brain
9	chr14:39416600-39418200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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