Variant report

Variant	rs2025287
Chromosome Location	chr4:20316053-20316054
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12641426	0.83[AMR][1000 genomes]
rs1323062	0.83[AMR][1000 genomes]
rs1323066	0.90[ASN][1000 genomes]
rs13434430	0.83[AMR][1000 genomes]
rs17535770	0.97[ASN][1000 genomes]
rs28642776	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28735796	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500869	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs505954	0.97[ASN][1000 genomes]
rs587032	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs668592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7655084	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7682397	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685284	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593793	chr4:20282334-20333722	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878740	chr4:20292239-20333722	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20291800-20319000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:20299400-20319000	Weak transcription	NHLF	lung
3	chr4:20301400-20316800	Weak transcription	NHDF-Ad	bronchial
4	chr4:20306200-20325600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:20312400-20317000	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:20313000-20318600	Weak transcription	Brain Angular Gyrus	brain
7	chr4:20313600-20319000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:20314000-20318600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:20314000-20319000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:20315200-20318000	Weak transcription	Brain Anterior Caudate	brain
11	chr4:20315400-20316200	Enhancers	Brain Substantia Nigra	brain
12	chr4:20315600-20325600	Weak transcription	Lung	lung
13	chr4:20315600-20328000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:20315800-20317600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:20316000-20318400	Weak transcription	Fetal Lung	lung
16	chr4:20316000-20321800	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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