Variant report

Variant	rs505954
Chromosome Location	chr4:20315602-20315603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1323066	0.86[ASN][1000 genomes]
rs17535770	1.00[ASN][1000 genomes]
rs2025287	0.97[ASN][1000 genomes]
rs28735796	0.97[ASN][1000 genomes]
rs500869	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs587032	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs668592	0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655084	0.86[ASN][1000 genomes]
rs7682397	0.97[ASN][1000 genomes]
rs7685284	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593793	chr4:20282334-20333722	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878740	chr4:20292239-20333722	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20291800-20319000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:20299400-20319000	Weak transcription	NHLF	lung
3	chr4:20301400-20316800	Weak transcription	NHDF-Ad	bronchial
4	chr4:20306200-20325600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:20312400-20317000	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:20313000-20318600	Weak transcription	Brain Angular Gyrus	brain
7	chr4:20313600-20319000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:20314000-20318600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:20314000-20319000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:20314800-20315800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:20315000-20316000	Enhancers	Fetal Lung	lung
12	chr4:20315200-20318000	Weak transcription	Brain Anterior Caudate	brain
13	chr4:20315400-20316200	Enhancers	Brain Substantia Nigra	brain
14	chr4:20315600-20315800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:20315600-20325600	Weak transcription	Lung	lung
16	chr4:20315600-20328000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links