Variant report

Variant	rs2025564
Chromosome Location	chr10:58511654-58511655
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10740677	0.94[ASN][1000 genomes]
rs10740688	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10763380	0.80[ASN][1000 genomes]
rs10763381	0.80[ASN][1000 genomes]
rs10763383	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10763385	0.93[ASN][1000 genomes]
rs10763432	0.83[ASN][1000 genomes]
rs10825869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10825913	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10825914	0.83[ASN][1000 genomes]
rs10825918	0.83[ASN][1000 genomes]
rs10825919	0.83[ASN][1000 genomes]
rs11005567	0.83[ASN][1000 genomes]
rs11005570	0.83[ASN][1000 genomes]
rs12412000	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes]
rs1536082	0.83[ASN][1000 genomes]
rs1886607	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1914560	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914577	0.91[ASN][1000 genomes]
rs1914578	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1914579	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1914580	0.91[ASN][1000 genomes]
rs1925286	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1925287	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1925292	0.83[ASN][1000 genomes]
rs1925293	0.83[ASN][1000 genomes]
rs1925294	0.83[ASN][1000 genomes]
rs1925297	0.83[ASN][1000 genomes]
rs1925298	0.83[ASN][1000 genomes]
rs1925299	0.83[ASN][1000 genomes]
rs1925310	0.83[ASN][1000 genomes]
rs2031461	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2069165	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes]
rs2224958	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4370856	0.83[ASN][1000 genomes]
rs4443998	0.80[ASN][1000 genomes]
rs4935147	0.94[ASN][1000 genomes]
rs4935655	0.94[ASN][1000 genomes]
rs4935670	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4935674	0.83[ASN][1000 genomes]
rs7081437	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7085248	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7096650	0.91[ASN][1000 genomes]
rs7914070	0.83[ASN][1000 genomes]
rs7914212	0.80[ASN][1000 genomes]
rs7917259	0.83[ASN][1000 genomes]
rs991653	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs993717	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752691	chr10:57738694-58541894	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039709	chr10:58343941-58522183	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540649	chr10:58343941-58522183	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv427866	chr10:58448655-58548655	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv551064	chr10:58457011-58702440	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2754330	chr10:58477451-58511952	Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv2756467	chr10:58489294-58511952	Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv2758223	chr10:58490630-58689953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2759758	chr10:58490630-58689953	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv437117	chr10:58497570-58531235	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv470948	chr10:58498060-58519258	Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv947639	chr10:58500054-58513799	Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv895505	chr10:58500057-58517273	Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv551065	chr10:58501922-58517273	Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv895506	chr10:58505135-58562422	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv467267	chr10:58506372-58519258	Enhancers	n/a	n/a	inside rSNPs	diseases
17	nsv551075	chr10:58506372-58519258	Enhancers	n/a	n/a	inside rSNPs	diseases
18	nsv551076	chr10:58506372-58538212	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv2753113	chr10:58507400-58532765	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv971888	chr10:58508001-58513799	Enhancers	n/a	n/a	inside rSNPs	diseases
21	nsv551078	chr10:58508934-58520323	Enhancers	n/a	n/a	inside rSNPs	diseases
22	nsv1053357	chr10:58508934-58526825	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv437681	chr10:58510731-58531235	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv1041400	chr10:58511444-58526825	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv2764135	chr10:58511444-58536063	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv517118	chr10:58511654-58519258	Enhancers	n/a	n/a	inside rSNPs	diseases
27	nsv551079	chr10:58511654-58520323	Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2025564	ZWINT	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58511600-58512400	Enhancers	Brain Germinal Matrix	brain

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