Variant report

Variant	rs1925293
Chromosome Location	chr10:58639245-58639246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10740688	1.00[ASN][1000 genomes]
rs10763432	1.00[ASN][1000 genomes]
rs10763436	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10825869	0.83[ASN][1000 genomes]
rs10825913	1.00[ASN][1000 genomes]
rs10825914	1.00[ASN][1000 genomes]
rs10825915	0.96[ASN][1000 genomes]
rs10825918	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10825919	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005567	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005570	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354697	0.83[ASN][1000 genomes]
rs1536082	1.00[ASN][1000 genomes]
rs1886607	0.96[ASN][1000 genomes]
rs1914560	0.83[ASN][1000 genomes]
rs1925286	1.00[ASN][1000 genomes]
rs1925287	1.00[ASN][1000 genomes]
rs1925292	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925294	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925297	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925298	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925299	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925310	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025564	0.83[ASN][1000 genomes]
rs2031461	1.00[ASN][1000 genomes]
rs2224958	1.00[ASN][1000 genomes]
rs2255193	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2578094	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2578095	0.90[ASN][1000 genomes]
rs2578096	0.88[ASN][1000 genomes]
rs2818847	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2818848	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2818849	0.90[ASN][1000 genomes]
rs2818850	0.90[ASN][1000 genomes]
rs4370856	1.00[ASN][1000 genomes]
rs4443998	0.96[ASN][1000 genomes]
rs4935670	1.00[ASN][1000 genomes]
rs4935674	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081437	1.00[ASN][1000 genomes]
rs7085248	1.00[ASN][1000 genomes]
rs72796045	0.83[ASN][1000 genomes]
rs7914070	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917259	1.00[ASN][1000 genomes]
rs991653	1.00[ASN][1000 genomes]
rs993717	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551064	chr10:58457011-58702440	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2758223	chr10:58490630-58689953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2759758	chr10:58490630-58689953	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2757390	chr10:58567723-58644512	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv895510	chr10:58602006-58672533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv947641	chr10:58620064-58685420	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1925293	ZWINT	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58636200-58639800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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