Variant report

Variant	rs2818849
Chromosome Location	chr10:58677382-58677383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10740688	0.90[ASN][1000 genomes]
rs10763432	0.90[ASN][1000 genomes]
rs10763436	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10825913	0.90[ASN][1000 genomes]
rs10825914	0.90[ASN][1000 genomes]
rs10825915	0.86[ASN][1000 genomes]
rs10825918	0.90[ASN][1000 genomes]
rs10825919	0.90[ASN][1000 genomes]
rs11005567	0.90[ASN][1000 genomes]
rs11005570	0.90[ASN][1000 genomes]
rs11005583	0.88[ASN][1000 genomes]
rs11005584	0.88[ASN][1000 genomes]
rs12354697	0.92[ASN][1000 genomes]
rs1536082	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16909826	0.88[ASN][1000 genomes]
rs1886607	0.87[ASN][1000 genomes]
rs1925286	0.90[ASN][1000 genomes]
rs1925287	0.90[ASN][1000 genomes]
rs1925292	0.90[ASN][1000 genomes]
rs1925293	0.90[ASN][1000 genomes]
rs1925294	0.90[ASN][1000 genomes]
rs1925297	0.90[ASN][1000 genomes]
rs1925298	0.90[ASN][1000 genomes]
rs1925299	0.90[ASN][1000 genomes]
rs1925310	0.90[ASN][1000 genomes]
rs2031461	0.90[ASN][1000 genomes]
rs2224958	0.90[ASN][1000 genomes]
rs2255193	1.00[ASN][1000 genomes]
rs2578094	1.00[ASN][1000 genomes]
rs2578095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2578096	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2818847	1.00[ASN][1000 genomes]
rs2818848	1.00[ASN][1000 genomes]
rs2818850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4370856	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4443998	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4935670	0.90[ASN][1000 genomes]
rs4935674	0.90[ASN][1000 genomes]
rs7081437	0.90[ASN][1000 genomes]
rs7085248	0.90[ASN][1000 genomes]
rs72796045	0.92[ASN][1000 genomes]
rs7914070	0.90[ASN][1000 genomes]
rs7917259	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs991653	0.90[ASN][1000 genomes]
rs993717	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551064	chr10:58457011-58702440	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2758223	chr10:58490630-58689953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2759758	chr10:58490630-58689953	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv947641	chr10:58620064-58685420	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv895511	chr10:58640650-58789387	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv895512	chr10:58640650-58834542	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv895513	chr10:58672533-58979792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2818849	ZWINT	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58676800-58677600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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