Variant report

Variant	rs72796045
Chromosome Location	chr10:58705459-58705460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10740688	0.83[ASN][1000 genomes]
rs10763432	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10763436	0.86[ASN][1000 genomes]
rs10825913	0.83[ASN][1000 genomes]
rs10825914	0.83[ASN][1000 genomes]
rs10825915	0.86[ASN][1000 genomes]
rs10825918	0.83[ASN][1000 genomes]
rs10825919	0.83[ASN][1000 genomes]
rs10825968	0.80[ASN][1000 genomes]
rs11005567	0.83[ASN][1000 genomes]
rs11005570	0.83[ASN][1000 genomes]
rs11005583	0.96[ASN][1000 genomes]
rs11005584	0.96[ASN][1000 genomes]
rs12242066	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12354697	1.00[ASN][1000 genomes]
rs1536082	0.83[ASN][1000 genomes]
rs16909826	0.96[ASN][1000 genomes]
rs1925286	0.83[ASN][1000 genomes]
rs1925287	0.83[ASN][1000 genomes]
rs1925292	0.83[ASN][1000 genomes]
rs1925293	0.83[ASN][1000 genomes]
rs1925294	0.83[ASN][1000 genomes]
rs1925297	0.83[ASN][1000 genomes]
rs1925298	0.83[ASN][1000 genomes]
rs1925299	0.83[ASN][1000 genomes]
rs1925310	0.83[ASN][1000 genomes]
rs2031461	0.83[ASN][1000 genomes]
rs2224958	0.83[ASN][1000 genomes]
rs2255193	0.92[ASN][1000 genomes]
rs2393136	0.80[ASN][1000 genomes]
rs2578094	0.92[ASN][1000 genomes]
rs2578095	0.92[ASN][1000 genomes]
rs2578096	0.90[ASN][1000 genomes]
rs2818847	0.92[ASN][1000 genomes]
rs2818848	0.92[ASN][1000 genomes]
rs2818849	0.92[ASN][1000 genomes]
rs2818850	0.92[ASN][1000 genomes]
rs4370856	0.83[ASN][1000 genomes]
rs4935670	0.83[ASN][1000 genomes]
rs4935674	0.83[ASN][1000 genomes]
rs7081437	0.83[ASN][1000 genomes]
rs7085248	0.83[ASN][1000 genomes]
rs7914070	0.83[ASN][1000 genomes]
rs7917259	0.83[ASN][1000 genomes]
rs991653	0.83[ASN][1000 genomes]
rs993717	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895511	chr10:58640650-58789387	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv895512	chr10:58640650-58834542	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv895513	chr10:58672533-58979792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58705200-58707200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links