Variant report

Variant	rs2026524
Chromosome Location	chr13:39779135-39779136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11840389	0.80[EUR][1000 genomes]
rs4362261	0.81[EUR][1000 genomes]
rs544151	0.81[EUR][1000 genomes]
rs60345209	0.81[EUR][1000 genomes]
rs7330627	0.81[EUR][1000 genomes]
rs9315663	0.81[EUR][1000 genomes]
rs9315664	0.88[EUR][1000 genomes]
rs9532345	0.87[EUR][1000 genomes]
rs9532346	0.81[EUR][1000 genomes]
rs9532347	0.88[EUR][1000 genomes]
rs9532349	0.81[EUR][1000 genomes]
rs9532350	0.81[EUR][1000 genomes]
rs9532351	0.81[EUR][1000 genomes]
rs9532352	0.81[EUR][1000 genomes]
rs9532353	0.81[EUR][1000 genomes]
rs9548668	0.80[EUR][1000 genomes]
rs9548669	0.81[EUR][1000 genomes]
rs9548670	0.81[EUR][1000 genomes]
rs9548674	0.81[EUR][1000 genomes]
rs9548675	0.88[EUR][1000 genomes]
rs9548676	0.81[EUR][1000 genomes]
rs9548677	0.81[EUR][1000 genomes]
rs9548678	0.81[EUR][1000 genomes]
rs9548679	0.81[EUR][1000 genomes]
rs9548680	0.81[EUR][1000 genomes]
rs9548682	0.81[EUR][1000 genomes]
rs9576756	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1048391	chr13:39735088-39832358	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1036124	chr13:39735088-39837566	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047276	chr13:39735088-39839257	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39775600-39786400	Weak transcription	Left Ventricle	heart
2	chr13:39775800-39782000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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