Variant report

Variant	rs9315664
Chromosome Location	chr13:39784382-39784383
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12429285	0.81[EUR][1000 genomes]
rs17528800	0.81[EUR][1000 genomes]
rs2026524	0.88[EUR][1000 genomes]
rs944863	0.81[EUR][1000 genomes]
rs944864	0.81[EUR][1000 genomes]
rs9532345	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9532347	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9532354	0.82[EUR][1000 genomes]
rs9532357	0.82[EUR][1000 genomes]
rs9548673	0.80[EUR][1000 genomes]
rs9548675	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576753	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9576756	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576758	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1048391	chr13:39735088-39832358	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1036124	chr13:39735088-39837566	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047276	chr13:39735088-39839257	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39775600-39786400	Weak transcription	Left Ventricle	heart
2	chr13:39782600-39786600	Enhancers	Fetal Lung	lung
3	chr13:39783000-39785800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:39783400-39784800	Enhancers	Fetal Muscle Leg	muscle
5	chr13:39783400-39785800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:39783400-39785800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:39783600-39784600	Enhancers	NHLF	lung
8	chr13:39783600-39785600	Enhancers	Fetal Stomach	stomach
9	chr13:39783600-39785800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:39783800-39785400	Enhancers	Ovary	ovary
11	chr13:39783800-39785600	Enhancers	Osteobl	bone
12	chr13:39783800-39785800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:39784000-39785200	Weak transcription	Lung	lung
14	chr13:39784200-39785800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:39784200-39785800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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