Variant report

Variant	rs2027145
Chromosome Location	chr13:80385987-80385988
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1119379	0.95[AFR][1000 genomes]
rs12584389	0.81[AFR][1000 genomes]
rs2095466	0.95[AFR][1000 genomes]
rs2105044	0.95[AFR][1000 genomes]
rs4885663	0.95[AFR][1000 genomes]
rs4885666	0.87[AFR][1000 genomes]
rs57927070	0.83[AFR][1000 genomes]
rs58845200	0.89[AFR][1000 genomes]
rs61596567	0.96[AFR][1000 genomes]
rs6563134	0.95[AFR][1000 genomes]
rs7332414	0.95[AFR][1000 genomes]
rs9530961	0.93[AFR][1000 genomes]
rs9545199	0.89[AFR][1000 genomes]
rs986832	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80378400-80386000	Weak transcription	Spleen	Spleen
2	chr13:80378400-80386400	Weak transcription	Thymus	Thymus
3	chr13:80383400-80386000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:80383800-80386000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:80383800-80386200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:80384000-80386000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:80384000-80386000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:80384000-80386000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:80384000-80386200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:80384000-80386600	Enhancers	Fetal Heart	heart
11	chr13:80384000-80387800	Enhancers	HUVEC	blood vessel
12	chr13:80384200-80386200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr13:80384200-80386200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:80384400-80386000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:80384400-80386200	Enhancers	A549	lung
16	chr13:80384600-80386400	Enhancers	NHDF-Ad	bronchial
17	chr13:80384800-80386200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr13:80385000-80386000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:80385200-80386200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr13:80385400-80386200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr13:80385400-80386200	Enhancers	Primary B cells from cord blood	blood
22	chr13:80385400-80388000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr13:80385600-80386000	Weak transcription	Brain Hippocampus Middle	brain
24	chr13:80385600-80386000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr13:80385600-80386200	Enhancers	GM12878-XiMat	blood
26	chr13:80385600-80386400	Enhancers	H9 Cell Line	embryonic stem cell
27	chr13:80385800-80386000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr13:80385800-80386400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:80385800-80387800	Enhancers	Primary B cells from peripheral blood	blood

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