Variant report

Variant	rs986832
Chromosome Location	chr13:80386845-80386846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1119379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12584389	0.81[AFR][1000 genomes]
rs2027145	0.95[AFR][1000 genomes]
rs2095466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2105044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4885663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4885666	0.91[AFR][1000 genomes]
rs57927070	0.87[AFR][1000 genomes]
rs58845200	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61596567	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6563134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7332414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7990489	1.00[AMR][1000 genomes]
rs9530961	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9545199	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80384000-80387800	Enhancers	HUVEC	blood vessel
2	chr13:80385400-80388000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr13:80385800-80387800	Enhancers	Primary B cells from peripheral blood	blood
4	chr13:80386000-80387800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr13:80386000-80388200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr13:80386400-80387400	Enhancers	Thymus	Thymus
7	chr13:80386600-80387200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr13:80386600-80387800	Weak transcription	Fetal Heart	heart
9	chr13:80386800-80387000	Enhancers	GM12878-XiMat	blood
10	chr13:80386800-80387200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:80386800-80387200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:80386800-80387600	Enhancers	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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