Variant report

Variant	rs2027445
Chromosome Location	chr13:95921388-95921389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12864631	0.97[ASN][1000 genomes]
rs1970477	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389232	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2389233	0.81[EUR][1000 genomes]
rs4360814	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4771910	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4773865	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7317112	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322318	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7991972	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7996898	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8001475	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8002180	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9524869	0.97[ASN][1000 genomes]
rs9584288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590228	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9590229	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95880600-95922600	Weak transcription	Psoas Muscle	Psoas
2	chr13:95896200-95923400	Weak transcription	Ovary	ovary
3	chr13:95897000-95927400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr13:95908000-95926600	Weak transcription	Gastric	stomach
5	chr13:95910200-95927400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:95913600-95932800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr13:95916400-95922000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr13:95917000-95931400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr13:95918400-95923400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:95918800-95922800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr13:95919000-95922600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr13:95919000-95922800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:95919000-95923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:95919000-95925600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr13:95919000-95930000	Weak transcription	Esophagus	oesophagus
16	chr13:95919200-95922800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:95919400-95923200	Enhancers	HSMM	muscle
18	chr13:95919400-95923600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:95919400-95924200	Enhancers	Fetal Stomach	stomach
20	chr13:95919600-95922000	Enhancers	Colon Smooth Muscle	Colon
21	chr13:95919600-95923000	Genic enhancers	K562	blood
22	chr13:95919600-95923400	Enhancers	Osteobl	bone
23	chr13:95919600-95924800	Enhancers	HUVEC	blood vessel
24	chr13:95919800-95922000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr13:95919800-95922600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr13:95919800-95923600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr13:95919800-95924600	Enhancers	Rectal Smooth Muscle	rectum
28	chr13:95919800-95928000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr13:95920000-95923600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr13:95920000-95923600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr13:95920200-95921400	Enhancers	HSMMtube	muscle
32	chr13:95920200-95921600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr13:95920200-95921800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr13:95920200-95922400	Enhancers	NHEK	skin
35	chr13:95920200-95922800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr13:95920200-95923600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr13:95920200-95928800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr13:95920200-95952800	Weak transcription	Aorta	Aorta
39	chr13:95920400-95922800	Weak transcription	Fetal Intestine Large	intestine
40	chr13:95920400-95923000	Enhancers	NHDF-Ad	bronchial
41	chr13:95920400-95923400	Weak transcription	Brain Hippocampus Middle	brain
42	chr13:95920400-95923400	Weak transcription	HepG2	liver
43	chr13:95920400-95923600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:95920400-95924400	Enhancers	NH-A	brain
45	chr13:95920400-95927400	Weak transcription	Hela-S3	cervix
46	chr13:95920600-95921800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr13:95920600-95922600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr13:95920600-95922600	Weak transcription	Pancreas	Pancrea
49	chr13:95920600-95922800	Weak transcription	Fetal Muscle Leg	muscle
50	chr13:95920600-95928200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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