Variant report

Variant	rs4771910
Chromosome Location	chr13:95929888-95929889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95929149..95932336-chr13:95935085..95938343,4	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12864631	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs1970477	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2027445	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2389232	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2389233	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4148424	0.94[ASW][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs4360814	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4771911	0.90[JPT][hapmap]
rs4773865	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7322318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7324283	0.94[ASW][hapmap];0.87[LWK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs7991972	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7996898	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8001475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8002180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9524869	0.81[ASN][1000 genomes]
rs9584288	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9590228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9590229	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv900926	chr13:95927386-95972496	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv900927	chr13:95927386-95975185	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv900928	chr13:95929326-95946640	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv456078	chr13:95929888-95972496	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv562770	chr13:95929888-95972496	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95913600-95932800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr13:95917000-95931400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:95919000-95930000	Weak transcription	Esophagus	oesophagus
4	chr13:95920200-95952800	Weak transcription	Aorta	Aorta
5	chr13:95923800-95941200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:95924200-95930800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr13:95924200-95932800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr13:95924600-95952600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr13:95924800-95932200	Weak transcription	HUVEC	blood vessel
10	chr13:95925800-95932200	Weak transcription	Psoas Muscle	Psoas
11	chr13:95926600-95952400	Weak transcription	Brain Hippocampus Middle	brain
12	chr13:95926800-95931400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr13:95926800-95932800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr13:95926800-95948600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:95927000-95930200	Weak transcription	Right Atrium	heart
16	chr13:95927000-95930600	Weak transcription	Left Ventricle	heart
17	chr13:95927000-95930600	Weak transcription	Spleen	Spleen
18	chr13:95927000-95931400	Enhancers	K562	blood
19	chr13:95927000-95932000	Weak transcription	Right Ventricle	heart
20	chr13:95927000-95932800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr13:95927000-95937800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr13:95927000-95938000	Weak transcription	Colonic Mucosa	Colon
23	chr13:95927200-95932000	Weak transcription	Lung	lung
24	chr13:95927200-95941600	Weak transcription	Gastric	stomach
25	chr13:95927800-95930600	Weak transcription	Ovary	ovary
26	chr13:95927800-95932000	Weak transcription	Brain Anterior Caudate	brain
27	chr13:95928000-95930600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr13:95928000-95931000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr13:95928400-95930000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr13:95928400-95931200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:95928400-95931800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr13:95928400-95932000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:95928400-95932600	Weak transcription	HSMMtube	muscle
34	chr13:95928400-95932600	Weak transcription	NH-A	brain
35	chr13:95928400-95933800	Weak transcription	Fetal Kidney	kidney
36	chr13:95928400-95934000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr13:95928400-95937600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr13:95928400-95937800	Weak transcription	Fetal Intestine Small	intestine
39	chr13:95928600-95930600	Weak transcription	GM12878-XiMat	blood
40	chr13:95928600-95931800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr13:95928600-95932000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:95928600-95932200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr13:95928600-95932200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:95928600-95932200	Weak transcription	HSMM	muscle
45	chr13:95928600-95932800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr13:95928600-95932800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr13:95928600-95932800	Weak transcription	Osteobl	bone
48	chr13:95928600-95933000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr13:95928600-95933200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr13:95928800-95932200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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