Variant report
Variant | rs2029582 |
---|---|
Chromosome Location | chr2:113863771-113863772 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:113717657..113719208-chr2:113861543..113864051,2 | K562 | blood: | |
2 | chr2:113856768..113859655-chr2:113862329..113864158,2 | K562 | blood: | |
3 | chr2:113863108..113865660-chr2:113875310..113877504,3 | MCF-7 | breast: | |
4 | chr2:113859222..113863873-chr2:113865698..113870621,4 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
IL1RN | TF binding region |
ENSG00000136689 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10185781 | 0.89[JPT][hapmap] |
rs10207930 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11123159 | 0.89[JPT][hapmap] |
rs11123161 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11123162 | 0.87[CHD][hapmap];0.80[JPT][hapmap] |
rs11681884 | 0.89[JPT][hapmap] |
rs11684719 | 0.89[JPT][hapmap] |
rs11687782 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11886754 | 0.89[JPT][hapmap] |
rs11891198 | 0.88[JPT][hapmap] |
rs11893386 | 0.89[JPT][hapmap] |
rs11899198 | 0.80[CHD][hapmap];0.89[JPT][hapmap] |
rs13394316 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs13406085 | 0.80[CHD][hapmap];0.89[JPT][hapmap] |
rs1542176 | 0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs17042810 | 0.80[CHD][hapmap];0.89[JPT][hapmap] |
rs17042853 | 0.89[JPT][hapmap] |
rs17042888 | 0.80[CHD][hapmap];0.89[JPT][hapmap] |
rs2087705 | 0.81[ASN][1000 genomes] |
rs315931 | 0.85[CHD][hapmap] |
rs4368340 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4575729 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4849153 | 0.80[JPT][hapmap] |
rs56341434 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs58965312 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6728590 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6731551 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6734238 | 0.81[TSI][hapmap] |
rs6738377 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7561598 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7575402 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv997348 | chr2:113688093-113986508 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
2 | nsv1007254 | chr2:113726982-113887782 | Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
3 | nsv535894 | chr2:113726982-113887782 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
4 | nsv1003928 | chr2:113846503-113887782 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |