Variant report

Variant	rs11684719
Chromosome Location	chr2:113842401-113842402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10185781	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10207930	0.89[JPT][hapmap]
rs11123159	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11677407	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11681884	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11683132	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11684277	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11684289	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11684371	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11686467	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11686511	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11687782	0.89[JPT][hapmap]
rs11688270	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11690459	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11883847	0.87[CEU][hapmap]
rs11886743	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11886754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11887249	0.82[EUR][1000 genomes]
rs11891198	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11893386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11897481	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11897709	0.82[EUR][1000 genomes]
rs11898158	0.85[EUR][1000 genomes]
rs11899198	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13390577	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13406085	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13410552	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13432148	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1542176	0.89[JPT][hapmap]
rs1623119	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17042721	0.87[CEU][hapmap]
rs17042750	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs17042810	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17042853	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17042888	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17042905	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs17042917	0.88[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs17486819	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1992761	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs1992762	0.82[EUR][1000 genomes]
rs1992763	0.80[EUR][1000 genomes]
rs2029582	0.89[JPT][hapmap]
rs2121327	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2121329	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28928270	0.85[EUR][1000 genomes]
rs34466405	0.82[EUR][1000 genomes]
rs34517213	0.80[EUR][1000 genomes]
rs3811053	0.89[CHB][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3811054	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55888413	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56060225	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56948778	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58036696	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58153729	0.88[ASN][1000 genomes]
rs58187820	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58922543	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59032902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60341065	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60562399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60924024	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60981695	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61366770	0.88[ASN][1000 genomes]
rs61546073	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6738377	0.89[JPT][hapmap]
rs72946783	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72946788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72950839	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72950861	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950867	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72950883	0.88[ASN][1000 genomes]
rs73955148	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73955151	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7561080	0.89[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv2881	chr2:113800805-113846597	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv511806	chr2:113841061-113844598	Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113839400-113843600	Weak transcription	Esophagus	oesophagus
2	chr2:113841400-113847400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:113842000-113843800	Enhancers	NHEK	skin
4	chr2:113842200-113842600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:113842200-113842600	Enhancers	Stomach Mucosa	stomach
6	chr2:113842200-113843800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:113842200-113843800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:113842200-113844000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:113842200-113844200	Enhancers	HMEC	breast
10	chr2:113842400-113842600	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links