Variant report

Variant	rs2030186
Chromosome Location	chr3:141350903-141350904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141349712..141351390-chr3:141359756..141361373,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1011330	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11711597	0.89[ASN][1000 genomes]
rs12632759	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13088397	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1400685	0.82[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs1994845	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2030187	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2640001	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2640019	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs295294	0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs295296	0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs295314	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs295315	0.82[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs295317	0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34319548	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34867571	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4467426	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4634089	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4683407	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs4683615	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6440024	0.82[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs6784270	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs6784413	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs6791890	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs6805124	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs7618625	0.82[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs7639695	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7650428	0.84[ASN][1000 genomes]
rs7653258	0.82[ASN][1000 genomes]
rs868767	0.89[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs868768	0.89[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs9812758	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141350000-141351800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:141350200-141352200	Weak transcription	Fetal Intestine Small	intestine

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