Variant report

Variant	rs2031736
Chromosome Location	chr9:25412425-25412426
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10115498	0.88[EUR][1000 genomes]
rs10115746	0.82[EUR][1000 genomes]
rs10119099	0.82[EUR][1000 genomes]
rs10119894	0.86[EUR][1000 genomes]
rs10121903	0.82[EUR][1000 genomes]
rs10733401	0.83[EUR][1000 genomes]
rs10733402	0.82[EUR][1000 genomes]
rs10738716	0.82[EUR][1000 genomes]
rs10738717	0.82[EUR][1000 genomes]
rs10738718	0.82[EUR][1000 genomes]
rs10738719	0.82[EUR][1000 genomes]
rs10738721	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10757522	0.83[EUR][1000 genomes]
rs10757523	0.82[EUR][1000 genomes]
rs10757524	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10757525	0.88[EUR][1000 genomes]
rs10757526	0.87[EUR][1000 genomes]
rs10757527	0.88[EUR][1000 genomes]
rs10757528	0.88[EUR][1000 genomes]
rs10757529	0.87[EUR][1000 genomes]
rs10757531	0.90[EUR][1000 genomes]
rs10757532	0.90[EUR][1000 genomes]
rs10757533	0.90[EUR][1000 genomes]
rs10757536	0.90[EUR][1000 genomes]
rs10757538	0.91[EUR][1000 genomes]
rs10757539	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10757540	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10812226	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10812229	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10812231	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10812234	0.91[EUR][1000 genomes]
rs10966883	0.84[EUR][1000 genomes]
rs10966884	0.82[EUR][1000 genomes]
rs10966885	0.82[EUR][1000 genomes]
rs10966893	0.91[EUR][1000 genomes]
rs10966896	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10966897	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12377312	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12685541	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1327380	0.82[EUR][1000 genomes]
rs1327381	0.82[EUR][1000 genomes]
rs1327382	0.82[EUR][1000 genomes]
rs1327394	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1409946	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1576028	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1576029	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1576040	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1576042	0.83[ASN][1000 genomes]
rs1590674	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1831079	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1901324	0.82[EUR][1000 genomes]
rs1901325	0.83[EUR][1000 genomes]
rs1901326	0.81[EUR][1000 genomes]
rs1901327	0.82[EUR][1000 genomes]
rs1901328	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1998961	0.82[EUR][1000 genomes]
rs2025826	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4449878	0.86[EUR][1000 genomes]
rs4480194	0.82[EUR][1000 genomes]
rs56014489	0.82[ASN][1000 genomes]
rs7026882	0.83[EUR][1000 genomes]
rs7040844	0.88[EUR][1000 genomes]
rs7040859	0.88[EUR][1000 genomes]
rs7041045	0.88[EUR][1000 genomes]
rs72707680	0.83[ASN][1000 genomes]
rs72707681	0.83[ASN][1000 genomes]
rs7468705	0.86[EUR][1000 genomes]
rs7850662	0.91[EUR][1000 genomes]
rs7850668	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7850910	0.92[EUR][1000 genomes]
rs7851064	0.87[EUR][1000 genomes]
rs7855132	0.92[EUR][1000 genomes]
rs7867884	0.88[EUR][1000 genomes]
rs7868012	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7871092	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs943510	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466309	chr9:25157678-25683220	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv613889	chr9:25157678-25683220	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1018570	chr9:25170659-25633419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv540100	chr9:25170659-25633419	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv869035	chr9:25287213-25779281	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1033677	chr9:25325400-25583227	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv540101	chr9:25325400-25583227	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv531597	chr9:25325401-25779422	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv892824	chr9:25363830-25426760	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25396800-25415200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:25410600-25413800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:25410800-25414200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:25411000-25414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:25411000-25415200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr9:25411200-25413800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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