Variant report

Variant	rs2033841
Chromosome Location	chr5:124594637-124594638
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11960564	0.83[EUR][1000 genomes]
rs12055008	0.83[EUR][1000 genomes]
rs1530450	0.87[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs17152482	0.83[EUR][1000 genomes]
rs17152509	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4587073	0.83[EUR][1000 genomes]
rs6866176	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124590600-124596800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:124593200-124609200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:124593400-124596600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:124593400-124596800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:124593600-124597400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:124593600-124598600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:124594000-124594800	Enhancers	Fetal Intestine Small	intestine
8	chr5:124594000-124595200	Enhancers	Fetal Intestine Large	intestine
9	chr5:124594000-124597600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:124594200-124594800	Enhancers	Duodenum Mucosa	Duodenum
11	chr5:124594600-124594800	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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