Variant report

Variant	rs6866176
Chromosome Location	chr5:124589973-124589974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11960564	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12055008	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1439605	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1595712	0.93[ASN][1000 genomes]
rs17152482	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17152529	0.87[ASN][1000 genomes]
rs2033841	0.83[EUR][1000 genomes]
rs4587073	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs719829	0.93[ASN][1000 genomes]
rs7731283	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124583600-124591800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:124587000-124594400	Weak transcription	Psoas Muscle	Psoas
3	chr5:124588000-124591200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr5:124588800-124590600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
5	chr5:124589000-124590600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:124589000-124590800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:124589600-124590400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:124589600-124594400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:124589800-124590400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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