Variant report

Variant	rs1595712
Chromosome Location	chr5:124582878-124582879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10463490	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1118619	0.81[EUR][1000 genomes]
rs11960564	0.95[ASN][1000 genomes]
rs12055008	0.85[ASN][1000 genomes]
rs12521045	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1439605	0.92[ASN][1000 genomes]
rs1530450	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs17152482	0.95[ASN][1000 genomes]
rs17152509	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs17152529	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2165154	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4587073	0.95[ASN][1000 genomes]
rs6866176	0.93[ASN][1000 genomes]
rs719829	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732776	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7731283	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124546600-124585200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124581400-124588200	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links