Variant report

Variant	rs732776
Chromosome Location	chr5:124615134-124615135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10463490	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12521045	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1530450	0.84[CEU][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs1562125	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1595712	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17152509	0.89[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs17152529	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2165154	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs719829	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124611600-124617200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:124611600-124617200	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:124611800-124617200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr5:124612800-124616800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:124612800-124617200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:124613600-124617200	Weak transcription	Fetal Heart	heart
7	chr5:124614400-124631400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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