Variant report

Variant	rs2035365
Chromosome Location	chr14:65647145-65647146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65646749..65648521-chr14:65650212..65652382,2	K562	blood:
2	chr14:65645421..65648212-chr14:65877162..65880498,3	MCF-7	breast:
3	chr14:65640216..65642886-chr14:65645703..65648052,2	MCF-7	breast:
4	chr14:65646236..65649201-chr14:65694087..65695699,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs7141753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7143001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151493	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7155464	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8007389	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8007878	0.94[ASN][1000 genomes]
rs8011724	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8022214	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65641600-65653400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:65641600-65653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65641600-65658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65641800-65647400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:65641800-65650600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:65641800-65653600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:65646000-65647800	Enhancers	Primary B cells from cord blood	blood
8	chr14:65646200-65647200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr14:65646200-65647800	Enhancers	HMEC	breast
10	chr14:65646400-65647400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:65646400-65647600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:65646400-65647600	Enhancers	Fetal Heart	heart
13	chr14:65646400-65647600	Enhancers	Fetal Intestine Small	intestine
14	chr14:65646400-65647600	Flanking Active TSS	GM12878-XiMat	blood
15	chr14:65646400-65647800	Enhancers	Primary B cells from peripheral blood	blood
16	chr14:65646400-65647800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:65646600-65647200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:65646600-65647400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr14:65646600-65647600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:65646600-65647600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:65646600-65647600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:65646600-65647600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:65646600-65647600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:65646600-65647600	Enhancers	Brain Angular Gyrus	brain
25	chr14:65646600-65647600	Enhancers	Brain Substantia Nigra	brain
26	chr14:65646600-65647600	Enhancers	Duodenum Mucosa	Duodenum
27	chr14:65646600-65647600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr14:65646600-65647600	Enhancers	Fetal Muscle Leg	muscle
29	chr14:65646600-65647600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr14:65646600-65647600	Enhancers	Stomach Mucosa	stomach
31	chr14:65646600-65647600	Enhancers	Hela-S3	cervix
32	chr14:65646600-65647800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:65646600-65647800	Enhancers	HSMM	muscle
34	chr14:65646600-65647800	Enhancers	HSMMtube	muscle
35	chr14:65646600-65647800	Enhancers	NHDF-Ad	bronchial
36	chr14:65646600-65648200	Enhancers	Pancreas	Pancrea
37	chr14:65646800-65647200	Enhancers	Primary hematopoietic stem cells	blood
38	chr14:65646800-65647200	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr14:65646800-65647200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr14:65646800-65647200	Flanking Active TSS	NHEK	skin
41	chr14:65646800-65647400	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr14:65646800-65647600	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr14:65646800-65647600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:65646800-65647600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr14:65646800-65647600	Enhancers	Brain Hippocampus Middle	brain
46	chr14:65646800-65647600	Enhancers	Ovary	ovary
47	chr14:65646800-65647600	Enhancers	HepG2	liver
48	chr14:65646800-65647800	Enhancers	Fetal Intestine Large	intestine
49	chr14:65646800-65647800	Enhancers	NHLF	lung
50	chr14:65647000-65647200	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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