Variant report

Variant	rs7155464
Chromosome Location	chr14:65648544-65648545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65647388..65649639-chr14:65690929..65693608,3	MCF-7	breast:
2	chr14:65646236..65649201-chr14:65694087..65695699,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2035365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7141753	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7141780	1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7143001	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7151493	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8007389	0.96[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8007878	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8022214	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7155464	SGPP1	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65641600-65653400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:65641600-65653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65641600-65658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65641800-65650600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:65641800-65653600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:65647600-65648600	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:65647600-65650600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:65647600-65650800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:65647600-65651000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:65647600-65651000	Weak transcription	Fetal Heart	heart
11	chr14:65647800-65650600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:65647800-65650600	Weak transcription	NH-A	brain
13	chr14:65647800-65650600	Weak transcription	NHEK	skin
14	chr14:65647800-65650600	Weak transcription	Osteobl	bone
15	chr14:65647800-65659800	Weak transcription	Fetal Intestine Large	intestine
16	chr14:65648200-65648800	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr14:65648200-65650000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:65648200-65652400	Weak transcription	Pancreas	Pancrea
19	chr14:65648400-65649600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:65648400-65650000	ZNF genes & repeats	GM12878-XiMat	blood

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