Variant report

Variant	rs2035749
Chromosome Location	chr3:21714091-21714092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12152385	1.00[YRI][hapmap]
rs17009275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17009299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17009327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2200945	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2200946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55689118	0.90[ASN][1000 genomes]
rs55905392	0.90[ASN][1000 genomes]
rs73138867	0.88[ASN][1000 genomes]
rs7610132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9816269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21707400-21719600	Weak transcription	Fetal Lung	lung
2	chr3:21707800-21719800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:21708000-21715600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:21708200-21719800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:21709800-21714400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:21710000-21719600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:21710000-21724400	Weak transcription	Left Ventricle	heart
8	chr3:21711200-21719600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:21712200-21715200	Enhancers	HUVEC	blood vessel
10	chr3:21712400-21717400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:21712800-21715000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:21713200-21714200	Enhancers	NHDF-Ad	bronchial
13	chr3:21713200-21714600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:21713200-21714600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:21713200-21714600	Enhancers	HSMM	muscle
16	chr3:21713200-21715400	Enhancers	NH-A	brain
17	chr3:21713200-21715400	Enhancers	NHLF	lung
18	chr3:21713200-21715600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:21713400-21714400	Enhancers	Osteobl	bone
20	chr3:21713400-21714600	Enhancers	HMEC	breast
21	chr3:21713400-21715000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:21713600-21714200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:21713600-21714400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:21713800-21714200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr3:21713800-21714200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:21713800-21714400	Enhancers	Psoas Muscle	Psoas
27	chr3:21713800-21715000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:21713800-21715200	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links