Variant report

Variant	rs2035978
Chromosome Location	chr8:119872630-119872631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11776000	0.89[ASN][1000 genomes]
rs11776031	0.89[ASN][1000 genomes]
rs11779357	0.84[ASN][1000 genomes]
rs11784196	0.84[ASN][1000 genomes]
rs11997801	0.89[ASN][1000 genomes]
rs13340616	0.95[ASN][1000 genomes]
rs17751221	0.89[ASN][1000 genomes]
rs2875844	0.89[ASN][1000 genomes]
rs56112113	0.89[ASN][1000 genomes]
rs57152492	0.89[ASN][1000 genomes]
rs57450365	0.89[ASN][1000 genomes]
rs57898934	0.89[ASN][1000 genomes]
rs58159878	0.89[ASN][1000 genomes]
rs58396245	0.89[ASN][1000 genomes]
rs59095144	0.89[ASN][1000 genomes]
rs73711934	0.89[ASN][1000 genomes]
rs903612	0.89[ASN][1000 genomes]
rs903613	0.89[ASN][1000 genomes]
rs903614	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv517081	chr8:119872439-119886889	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119870200-119873400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:119872200-119873000	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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